Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Reverse (-)

1084652 .. 1087560

Gene Structure 2909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGACCTCATGACAGCATTGCAACTTGTGCTTAGGAAGTCATTGGCTCATGGTGGGCTTACACGGGGCCTGCATGAAGCTGCCAAGGTCATTGAGAAGCATGCTGCACAGCTTTGTGTTTTGGCTGAGGACTGCGACCAGGCTGATTATGTTAAGCTGGTGAAGTCACTGTGTGCAGAGCATAATGTTAACCTAATGACAATTCCTAGTGCTAAAACTCTTGGAGAATGGTCTGGGCTTTGCAAGATTGATTCTGAAGGAAAGGCAAGAAAGGTCGTTGGTTGCTCTTGCGTTGTTGTCAAGGATTTTGGTGAAGATACAGAAGGCCTTCATGTTGTTCAGGAGTACGTGAAGTCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

120

Amino Acids

13.03

Weight (kDa)

6.28

Isoelectric Point (pI)

21.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	6 - 99	1e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	80, 112, 157
AluI	AGCT	3 cut(s)	80, 112, 157
AoxI	GGCC	2 cut(s)	67, 325
ApeKI	GCWGC	2 cut(s)	80, 104
Asp700I	GAANNNNTTC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	4, 67
AsuHPI	GGTGA	2 cut(s)	172, 323
AvaII	GGWCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	67, 91
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	81, 105
BlsI	GCNGC	2 cut(s)	82, 106
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	140
Bpu10I	CCTNAGC	2 cut(s)	32, 126
BsaAI	YACGTR	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	67, 91
BsgI	GTGCAG	2 cut(s)	90, 195
BshFI	GGCC	2 cut(s)	69, 327
BslFI	GGGAC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	69, 327
BspANI	GGCC	2 cut(s)	69, 327
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	71, 102
BstDEI	CTNAG	2 cut(s)	32, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	67, 91
BsuRI	GGCC	2 cut(s)	69, 327
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	71, 102
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	4, 67
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	5 cut(s)	10, 50, 74, 101, 332
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	32, 126
DraIII	CACNNNGTG	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	5 cut(s)	13, 53, 77, 104, 335
FaiI	YATR	7 cut(s)	11, 51, 75, 102, 150, 183, 333
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	5 cut(s)	9, 49, 73, 100, 331
Fnu4HI	GCNGC	2 cut(s)	81, 105
Fsp4HI	GCNGC	2 cut(s)	81, 105
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	2 cut(s)	81, 105
HaeIII	GGCC	2 cut(s)	69, 327
Hin1II	CATG	5 cut(s)	13, 53, 77, 104, 335
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	251
HpaI	GTTAAC	1 cut(s)	190
HphI	GGTGA	2 cut(s)	172, 323
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	10, 341
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	251, 317, 338
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	5 cut(s)	22, 73, 107, 176, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	32, 126
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	5 cut(s)	13, 53, 77, 104, 335
KspAI	GTTAAC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	83, 125, 143, 152, 219, 326
Lsp1109I	GCAGC	2 cut(s)	67, 91
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	326
MluCI	AATT	1 cut(s)	201
MnlI	CCTC	2 cut(s)	17, 121
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	3 cut(s)	153, 189, 361
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	13, 53, 77, 104, 335
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	82, 106
Ppu21I	YACGTR	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	4, 67
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	3 cut(s)	153, 189, 361
SatI	GCNGC	2 cut(s)	81, 105
Sau96I	GGNCC	2 cut(s)	4, 67
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	8 cut(s)	9, 82, 90, 114, 159, 195, 276, 351
SinI	GGWCC	1 cut(s)	4
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	201
SseBI	AGGCCT	1 cut(s)	327
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	1 cut(s)	351
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	153, 189, 361
Tru9I	TTAA	3 cut(s)	153, 189, 361
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	2 cut(s)	80, 104
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	90, 320
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.