Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Reverse (-)

630280 .. 632979

Gene Structure 2700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1009400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCAGGAGATGAAGAAGTTGCTGTTCCTGTTGCTGAGCCTGTTGCAGTTCCTGCAGCTCTAGGTGAACCAATGGACCTTTTGACAGCCTTGCAACTTGTGTTGAGGAAGTCATTAGCTCATGGGGGGCTCACTCGTGGACTCCACGAGGGTGCAAAGGTCATTGAGAAGCATGCTGCACAGGCACTATGTGCAGACCATAATGTTAAACTGATGTCAATTCCTAGTGCTAAAACTCTTGGAGAATGGGCCGGTCTTTGCAAGATTGATTCAGAAGGAAAGGCAAGAAAGGTTGTCGGTTGCTCCTGTGTTGTTGTGAAGGATTTCGGTGAAGAATCAGAAGGCCTCCATGTTGTTCAAGAGCACCTCAAGTCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

127

Amino Acids

13.25

Weight (kDa)

5.94

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	60 - 105	8.5e-09	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	359
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	59, 119
AluI	AGCT	2 cut(s)	59, 119
Alw21I	GWGCWC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	249, 343
ApeKI	GCWGC	2 cut(s)	56, 176
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	76, 249
AsuHPI	GGTGA	2 cut(s)	77, 341
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	2 cut(s)	135, 146
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	68, 163
BfaI	CTAG	2 cut(s)	62, 225
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	57, 177
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	2 cut(s)	58, 178
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 249
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	353
Bse118I	RCCGGY	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	68, 163
BsgI	GTGCAG	2 cut(s)	162, 213
BshFI	GGCC	2 cut(s)	251, 345
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	251, 345
Bsp1286I	GDGCHC	2 cut(s)	132, 366
Bsp1720I	GCTNAGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	251, 345
BspCNI	CTCAG	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssSI	CACGAG	2 cut(s)	135, 146
Bst2BI	CACGAG	2 cut(s)	135, 146
BstAPI	GCANNNNNTGC	2 cut(s)	53, 191
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 182, 191
BstNSI	RCATGY	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	68, 163
BsuRI	GGCC	2 cut(s)	251, 345
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	76, 249
CviAII	CATG	3 cut(s)	122, 173, 350
CviJI	RGCY	7 cut(s)	40, 59, 89, 119, 130, 251, 345
CviKI_1	RGCY	7 cut(s)	40, 59, 89, 119, 130, 251, 345
DdeI	CTNAG	1 cut(s)	36
DraIII	CACNNNGTG	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	3 cut(s)	125, 176, 353
FaiI	YATR	5 cut(s)	123, 174, 190, 201, 351
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	3 cut(s)	121, 172, 349
Fnu4HI	GCNGC	2 cut(s)	57, 177
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	57, 177
FspBI	CTAG	2 cut(s)	62, 225
GluI	GCNGC	2 cut(s)	57, 177
HaeIII	GGCC	2 cut(s)	251, 345
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	3 cut(s)	125, 176, 353
HinfI	GANTC	3 cut(s)	141, 269, 335
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	77, 341
Hpy166II	GTNNAC	2 cut(s)	68, 140
Hpy188I	TCNGA	2 cut(s)	274, 340
Hpy188III	TCNNGA	2 cut(s)	6, 359
Hpy8I	GTNNAC	2 cut(s)	68, 140
HpyAV	CCTTC	3 cut(s)	269, 313, 335
HpyCH4V	TGCA	7 cut(s)	47, 56, 94, 155, 179, 194, 261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 182, 191
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	125, 176, 353
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	6 cut(s)	42, 54, 66, 167, 265, 319
Lsp1109I	GCAGC	2 cut(s)	68, 163
MaeI	CTAG	2 cut(s)	62, 225
MboII	GAAGA	2 cut(s)	26, 344
MhlI	GDGCHC	2 cut(s)	132, 366
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	99, 142, 356, 377
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	2 cut(s)	207, 379
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	53, 182, 191
NlaIII	CATG	3 cut(s)	125, 176, 353
NspI	RCATGY	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	269, 335
PkrI	GCNGC	2 cut(s)	58, 178
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	76, 249
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	207, 379
SatI	GCNGC	2 cut(s)	57, 177
Sau96I	GGNCC	2 cut(s)	76, 249
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	132, 366
SetI	ASST	7 cut(s)	61, 67, 81, 121, 162, 294, 369
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	219
SseBI	AGGCCT	1 cut(s)	345
SspMI	CTAG	2 cut(s)	62, 225
StuI	AGGCCT	1 cut(s)	345
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	269, 335
Tru1I	TTAA	2 cut(s)	207, 379
Tru9I	TTAA	2 cut(s)	207, 379
TseI	GCWGC	2 cut(s)	56, 176
TspDTI	ATGAA	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	62, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.