FvH4_6g28730

Belongs to the eukaryotic ribosomal protein eS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002614
Physical Location & Seq
Reverse (-)
22176009 .. 22178010
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28730.t1

Sequence Viewer

Length: 426 bp
ATGTCAGGTGATGAAGCACCCGCACCAGTTGTAGCTGAAGCACCAGCTCCAGCCCTTGGAGAGCCTATGGATATCATGACAGCCGTGCAGCTTGTGCTGAGAAAATCACTGGCTCATGGTGGGCTTGTTAGAGGTCTGCATGAGGCTGCAAAGGTTGTTGAGAAGCATGCTGCCCAGCTCTGTGTGCTGGCTGAGGACTGTGACCAACAAGACTATGTTAAACTAGTCAAAGGTCTTTGTGCTGAGCACAATGTAAACATGTTGACTGTTCCCAATGCCAAGACCCTAGGAGAGTGGGCTGGTTTGTGCAAGATCGACTCTGAGGGCAAGGCTAGGAAGGTTGTTGGTTGCTCATGTGTTGTTGTGAAGGATTTTGGAGAGGATCATGAAGCTCTCCATGTTGTTCAGCAGCATGTTAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

142

Amino Acids

14.95

Weight (kDa)

5.76

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 28 - 121 1.2e-26 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 56
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 258
AhlI ACTAGT 1 cut(s) 223
AluBI AGCT 5 cut(s) 35, 47, 91, 178, 392
AluI AGCT 5 cut(s) 35, 47, 91, 178, 392
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 1 cut(s) 390
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 4 cut(s) 88, 146, 170, 409
AspA2I CCTAGG 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 20
AvrII CCTAGG 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 100, 133, 157, 421
BceAI ACGGC 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 223
BfaI CTAG 3 cut(s) 224, 287, 333
BisI GCNGC 4 cut(s) 89, 147, 171, 410
BlnI CCTAGG 1 cut(s) 286
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 4 cut(s) 90, 148, 172, 411
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 55, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 26, 114
BseDI CCNNGG 2 cut(s) 55, 286
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 4 cut(s) 89, 183, 234, 312
BseNI ACTGG 2 cut(s) 26, 114
BseXI GCAGC 4 cut(s) 100, 133, 157, 421
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 56
BsnI GGCC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 312, 382
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 4 cut(s) 90, 184, 235, 313
BspHI TCATGA 2 cut(s) 75, 385
BspPI GGATC 1 cut(s) 390
BsrI ACTGG 2 cut(s) 26, 114
BssECI CCNNGG 2 cut(s) 55, 286
BssMI GATC 2 cut(s) 312, 382
BssT1I CCWWGG 2 cut(s) 55, 286
Bst4CI ACNGT 2 cut(s) 200, 268
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 168, 189
BstDEI CTNAG 4 cut(s) 98, 192, 243, 321
BstKTI GATC 2 cut(s) 315, 385
BstMBI GATC 2 cut(s) 312, 382
BstMWI GCNNNNNNNGC 2 cut(s) 94, 184
BstNSI RCATGY 3 cut(s) 170, 262, 416
BstV1I GCAGC 4 cut(s) 100, 133, 157, 421
BsuRI GGCC 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 168, 189
CciI TCATGA 2 cut(s) 75, 385
CviAII CATG 9 cut(s) 76, 116, 140, 167, 259, 354, 386, 398, 413
DdeI CTNAG 4 cut(s) 98, 192, 243, 321
DpnI GATC 2 cut(s) 314, 384
DpnII GATC 2 cut(s) 312, 382
Eco130I CCWWGG 2 cut(s) 55, 286
Eco147I AGGCCT 1 cut(s) 422
Eco32I GATATC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 55, 286
ErhI CCWWGG 2 cut(s) 55, 286
FaeI CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
FatI CATG 9 cut(s) 75, 115, 139, 166, 258, 353, 385, 397, 412
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 89, 147, 171, 410
Fsp4HI GCNGC 4 cut(s) 89, 147, 171, 410
FspBI CTAG 3 cut(s) 224, 287, 333
GluI GCNGC 4 cut(s) 89, 147, 171, 410
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 1 cut(s) 422
Hin1II CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 1 cut(s) 317
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 256, 264
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 2 cut(s) 76, 386
Hpy8I GTNNAC 2 cut(s) 256, 264
HpyAV CCTTC 2 cut(s) 331, 361
HpyCH4III ACNGT 2 cut(s) 200, 268
HpyCH4V TGCA 4 cut(s) 88, 139, 149, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 184
HpyF3I CTNAG 4 cut(s) 98, 192, 243, 321
Hsp92II CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
Kzo9I GATC 2 cut(s) 312, 382
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 7 cut(s) 39, 57, 63, 95, 173, 188, 285
Lsp1109I GCAGC 4 cut(s) 100, 133, 157, 421
MaeI CTAG 3 cut(s) 224, 287, 333
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 314, 384
MboI GATC 2 cut(s) 312, 382
MhlI GDGCHC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 125, 136, 187, 316, 373
MseI TTAA 2 cut(s) 219, 417
MwoI GCNNNNNNNGC 2 cut(s) 94, 184
NdeII GATC 2 cut(s) 312, 382
NlaIII CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 3 cut(s) 170, 262, 416
PaeI GCATGC 1 cut(s) 170
PagI TCATGA 2 cut(s) 75, 385
PceI AGGCCT 1 cut(s) 422
PciI ACATGT 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 56
PkrI GCNGC 4 cut(s) 90, 148, 172, 411
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PscI ACATGT 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 219, 417
SatI GCNGC 4 cut(s) 89, 147, 171, 410
Sau3AI GATC 2 cut(s) 312, 382
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 223
SphI GCATGC 1 cut(s) 170
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 1 cut(s) 21
SspMI CTAG 3 cut(s) 224, 287, 333
StuI AGGCCT 1 cut(s) 422
StyI CCWWGG 2 cut(s) 55, 286
TaaI ACNGT 2 cut(s) 200, 268
TaqI TCGA 1 cut(s) 315
Tru1I TTAA 2 cut(s) 219, 417
Tru9I TTAA 2 cut(s) 219, 417
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 4 cut(s) 88, 146, 170, 409
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 27, 402
TspRI CASTG 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 56
XceI RCATGY 3 cut(s) 170, 262, 416
XmaJI CCTAGG 1 cut(s) 286
XspI CTAG 3 cut(s) 224, 287, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.