Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Forward (+)

7341670 .. 7343092

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G097200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAGGTGAAGAAGCTGCAGTGTCAACTGAGGCAGCGCCAGCAGCAGCGCCTGCTCCAGCTCCAGCTCTTGGTGAGCCTATGGATGTTACAACTGCTCTGCAGCTTGTGCTGAGAAAATCACTGGCTCATGGCGGTCTTGTTCGAGGTCTTCACGAAGCTGCAAAAGTGATTGAGAAGCATGCTGCCCAGCTCTGTGTGCTGGCAGAGGACTGTGATCAGCAAGACTATGTTAAACTGGTGAAAGCTCTTTGTGCTGACCACAACGTAAACATGCTGACCGTTCCCAGTGCCAAGACCCTAGGAGAGTGGGCTGGTCTGTGCAAGATTGATTCTGAGGGAAAGGCTAGGAAGGTCGTTGGTTGTTCTTGTGTGGTTGTGAAGGATTTTGGGGAGGATCACGAAGGTCTTCATGTTGTTCAGCAGCATGTGAAGGCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

148

Amino Acids

15.4

Weight (kDa)

5.76

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	71
AluBI	AGCT	7 cut(s)	17, 62, 68, 106, 161, 193, 248
AluI	AGCT	7 cut(s)	17, 62, 68, 106, 161, 193, 248
AlwI	GGATC	1 cut(s)	405
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	435
ApeKI	GCWGC	8 cut(s)	17, 35, 44, 47, 103, 161, 185, 424
Asp700I	GAANNNNTTC	1 cut(s)	408
AspA2I	CCTAGG	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	40, 52
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	20, 86, 253
AvrII	CCTAGG	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	143, 401
BbvI	GCAGC	8 cut(s)	4, 47, 56, 59, 115, 148, 172, 436
BclI	TGATCA	1 cut(s)	217
BfaI	CTAG	2 cut(s)	302, 348
BfmI	CTRYAG	2 cut(s)	18, 101
BfoI	RGCGCY	2 cut(s)	41, 53
BisI	GCNGC	8 cut(s)	18, 36, 45, 48, 104, 162, 186, 425
BlnI	CCTAGG	1 cut(s)	301
BlsI	GCNGC	8 cut(s)	19, 37, 46, 49, 105, 163, 187, 426
BmgT120I	GGNCC	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	2 cut(s)	143, 401
BpmI	CTGGAG	2 cut(s)	42, 48
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	129, 243, 288
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	3 cut(s)	21, 104, 327
BseNI	ACTGG	3 cut(s)	129, 243, 288
BseXI	GCAGC	8 cut(s)	4, 47, 56, 59, 115, 148, 172, 436
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	217, 397
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	3 cut(s)	22, 105, 328
BspMAI	CTGCAG	2 cut(s)	22, 105
BspPI	GGATC	1 cut(s)	405
BsrI	ACTGG	3 cut(s)	129, 243, 288
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	217, 397
BssT1I	CCWWGG	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	215, 283
BstAPI	GCANNNNNTGC	2 cut(s)	53, 109
BstC8I	GCNNGC	4 cut(s)	42, 54, 183, 204
BstDEI	CTNAG	3 cut(s)	30, 113, 336
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	2 cut(s)	41, 53
BstHHI	GCGC	2 cut(s)	40, 52
BstKTI	GATC	2 cut(s)	220, 400
BstMBI	GATC	2 cut(s)	217, 397
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 44, 53, 109, 199, 254
BstNSI	RCATGY	3 cut(s)	185, 277, 431
BstSFI	CTRYAG	2 cut(s)	18, 101
BstV1I	GCAGC	8 cut(s)	4, 47, 56, 59, 115, 148, 172, 436
BstV2I	GAAGAC	2 cut(s)	143, 401
BsuRI	GGCC	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 122, 295
Cac8I	GCNNGC	4 cut(s)	42, 54, 183, 204
CaiI	CAGNNNCTG	1 cut(s)	53
CfoI	GCGC	2 cut(s)	40, 52
Cfr13I	GGNCC	1 cut(s)	436
CviAII	CATG	5 cut(s)	131, 182, 274, 413, 428
DdeI	CTNAG	3 cut(s)	30, 113, 336
DpnI	GATC	2 cut(s)	219, 399
DpnII	GATC	2 cut(s)	217, 397
Eco130I	CCWWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	5 cut(s)	134, 185, 277, 416, 431
FaiI	YATR	7 cut(s)	83, 132, 183, 231, 275, 414, 429
FatI	CATG	5 cut(s)	130, 181, 273, 412, 427
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	8 cut(s)	18, 36, 45, 48, 104, 162, 186, 425
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	8 cut(s)	18, 36, 45, 48, 104, 162, 186, 425
FspBI	CTAG	2 cut(s)	302, 348
GlaI	GCGC	2 cut(s)	39, 51
GluI	GCNGC	8 cut(s)	18, 36, 45, 48, 104, 162, 186, 425
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	2 cut(s)	42, 48
HaeII	RGCGCY	2 cut(s)	41, 53
HaeIII	GGCC	1 cut(s)	437
HhaI	GCGC	2 cut(s)	40, 52
Hin1II	CATG	5 cut(s)	134, 185, 277, 416, 431
Hin6I	GCGC	2 cut(s)	38, 50
HinP1I	GCGC	2 cut(s)	38, 50
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	3 cut(s)	20, 86, 253
Hpy166II	GTNNAC	2 cut(s)	27, 271
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	155, 401
Hpy8I	GTNNAC	2 cut(s)	27, 271
HpyAV	CCTTC	4 cut(s)	346, 376, 398, 427
HpyCH4III	ACNGT	2 cut(s)	215, 283
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	20, 103, 164, 324
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 44, 53, 109, 199, 254
HpyF3I	CTNAG	3 cut(s)	30, 113, 336
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	134, 185, 277, 416, 431
HspAI	GCGC	2 cut(s)	38, 50
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 397
LmnI	GCTCC	2 cut(s)	61, 67
Lsp1109I	GCAGC	8 cut(s)	4, 47, 56, 59, 115, 148, 172, 436
MaeI	CTAG	2 cut(s)	302, 348
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	219, 399
MboI	GATC	2 cut(s)	217, 397
MboII	GAAGA	3 cut(s)	23, 143, 401
MnlI	CCTC	5 cut(s)	25, 140, 202, 331, 388
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	234
MwoI	GCNNNNNNNGC	6 cut(s)	41, 44, 53, 109, 199, 254
NdeII	GATC	2 cut(s)	217, 397
NlaIII	CATG	5 cut(s)	134, 185, 277, 416, 431
NspI	RCATGY	3 cut(s)	185, 277, 431
PaeI	GCATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	8 cut(s)	19, 37, 46, 49, 105, 163, 187, 426
PspFI	CCCAGC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	436
PstI	CTGCAG	2 cut(s)	22, 105
PstNI	CAGNNNCTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	8 cut(s)	18, 36, 45, 48, 104, 162, 186, 425
Sau3AI	GATC	2 cut(s)	217, 397
Sau96I	GGNCC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	18, 101
SphI	GCATGC	1 cut(s)	185
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	2 cut(s)	302, 348
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	215, 283
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	27, 129, 295
TseI	GCWGC	8 cut(s)	17, 35, 44, 47, 103, 161, 185, 424
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	27, 129, 295
Van91I	CCANNNNNTGG	1 cut(s)	71
XceI	RCATGY	3 cut(s)	185, 277, 431
XmaJI	CCTAGG	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	2 cut(s)	302, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.