Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Reverse (-)

9457782 .. 9459049

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13850.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAGGAGAAGAAGAGGTCGCTGTTCCTATTGCTGAGCCTGTTGCTGCTGCTGCAGCTCCAGGCGAACCCATGGACCTTCTGACAGCACTGCAACTTGTGCTGAGGAAGTCATTGGCTCATGGTGGGCTCACTCGTGGACTCCATGAAGGTGCAAAGGTCATCGAGAAGCATGCTGCACAGCTTTGTGTTGTAGCTGAGGACTGTGACCAGGCTGATTATGTTAAGCTTGTTAAGGCTCTATGCGCTGACCATAACGTCAAACTAATGTCAATTCCTAGTGCGAAAACTCTTGGAGAATGGGCTGGTCTTTGCAAGATTGATTCCGAAGGAAAGGCAAGAAAGGTTGTTGGTTGCTCTTGCGTCGTTGTGAAGGATTTTGGCGAGGAATCGGAAGGCCTCCACGTTGTTCAGGAGCACATTAAGTCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

145

Amino Acids

15.19

Weight (kDa)

5.6

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	61, 210
AluBI	AGCT	4 cut(s)	59, 184, 197, 229
AluI	AGCT	4 cut(s)	59, 184, 197, 229
Alw21I	GWGCWC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	5 cut(s)	47, 50, 53, 56, 176
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	420
BbvCI	CCTCAGC	2 cut(s)	104, 198
BbvI	GCAGC	5 cut(s)	34, 37, 40, 68, 163
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	2 cut(s)	63, 212
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	5 cut(s)	48, 51, 54, 57, 177
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	5 cut(s)	49, 52, 55, 58, 178
Bme1390I	CCNGG	2 cut(s)	63, 212
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	63, 212
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	2 cut(s)	104, 198
Bpu1102I	GCTNAGC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	63, 212
BseDI	CCNNGG	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	27, 95, 189
BseXI	GCAGC	5 cut(s)	34, 37, 40, 68, 163
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	132, 420
Bsp1720I	GCTNAGC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	3 cut(s)	28, 96, 190
BspMAI	CTGCAG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	63, 212
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	36, 104, 198
BstDSI	CCRYGG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 56, 100, 245
BstNI	CCWGG	2 cut(s)	63, 212
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	61, 210
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	34, 37, 40, 68, 163
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	352
CviAII	CATG	4 cut(s)	73, 122, 146, 173
DdeI	CTNAG	3 cut(s)	36, 104, 198
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	61, 210
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	76, 125, 149, 176
FaiI	YATR	7 cut(s)	74, 123, 147, 174, 222, 244, 255
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	4 cut(s)	72, 121, 145, 172
Fnu4HI	GCNGC	5 cut(s)	48, 51, 54, 57, 177
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	5 cut(s)	48, 51, 54, 57, 177
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	5 cut(s)	48, 51, 54, 57, 177
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	399
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	76, 125, 149, 176
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	141, 323, 389
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	3 cut(s)	84, 328, 394
Hpy188III	TCNNGA	2 cut(s)	166, 413
Hpy8I	GTNNAC	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	5 cut(s)	89, 143, 323, 367, 389
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	258, 405
HpyCH4V	TGCA	5 cut(s)	56, 94, 155, 179, 315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 56, 100, 245
HpyF3I	CTNAG	3 cut(s)	36, 104, 198
HpySE526I	ACGT	2 cut(s)	258, 405
Hsp92II	CATG	4 cut(s)	76, 125, 149, 176
HspAI	GCGC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	64, 415
LpnPI	CCDG	7 cut(s)	48, 54, 75, 197, 224, 291, 398
Lsp1109I	GCAGC	5 cut(s)	34, 37, 40, 68, 163
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	258, 405
MaeIII	GTNAC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	23, 26
MhlI	GDGCHC	2 cut(s)	132, 420
MluCI	AATT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	10, 99, 193, 379, 410
MseI	TTAA	4 cut(s)	225, 234, 423, 433
MslI	CAYNNNNRTG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	63, 212
MvaI	CCWGG	2 cut(s)	63, 212
MwoI	GCNNNNNNNGC	4 cut(s)	53, 56, 100, 245
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	4 cut(s)	76, 125, 149, 176
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	323, 389
PkrI	GCNGC	5 cut(s)	49, 52, 55, 58, 178
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	61, 210
PspGI	CCWGG	2 cut(s)	61, 210
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	225, 234, 423, 433
SatI	GCNGC	5 cut(s)	48, 51, 54, 57, 177
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	63, 212
SduI	GDGCHC	2 cut(s)	132, 420
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	150
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	399
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	61, 210
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	2 cut(s)	261, 408
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	323, 389
Tru1I	TTAA	4 cut(s)	225, 234, 423, 433
Tru9I	TTAA	4 cut(s)	225, 234, 423, 433
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	5 cut(s)	47, 50, 53, 56, 176
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.