FvH4_1g01120

Belongs to the eukaryotic ribosomal protein eS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002614
Physical Location & Seq
Reverse (-)
572077 .. 574829
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01120.t3

Sequence Viewer

Length: 336 bp
ATGGACCTCATGACAGCATTGCAACTTGTGCTTAGGAAGTCATTGGCTCATGGTGGGCTTACACGGGGTCATGAAGCTGCCCAGGTCATTGAGAAGCATGCTGCACAGCTGTGTGTTTTGGCTGAGGACTGCGACCAGGCTGATTATGTGAAGCTTGTCAAGTCCCTGTGTGCAGAGCATAATGTTAACGCAATGACAATTCCTAGCGCCAAAACTCTTGGAGAATGGTCTGGGCTTTGCAAGATTGATTCTGAAGGAAAAGCAAGAAAGGTTGTTGGCTGCTCTTGCGTTGTTGTCAAAATACAGAAGGCCTTCATGTTGTTCAGGAGTATGTGA

Protein Analysis

112

Amino Acids

12.06

Weight (kDa)

8.57

Isoelectric Point (pI)

23.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 6 - 98 2.7e-22 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 273
AjnI CCWGG 2 cut(s) 81, 135
AleI CACNNNNGTG 1 cut(s) 109
AluBI AGCT 3 cut(s) 77, 109, 154
AluI AGCT 3 cut(s) 77, 109, 154
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 77, 101, 279
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 64, 88, 266
BciT130I CCWGG 2 cut(s) 83, 137
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 3 cut(s) 78, 102, 280
BlsI GCNGC 3 cut(s) 79, 103, 281
Bme1390I CCNGG 2 cut(s) 83, 137
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 83, 137
Bpu10I CCTNAGC 2 cut(s) 32, 123
BsaJI CCNNGG 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 17, 198
BseBI CCWGG 2 cut(s) 83, 137
BseDI CCNNGG 1 cut(s) 81
BseMI GCAATG 2 cut(s) 17, 198
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 3 cut(s) 64, 88, 266
BsgI GTGCAG 2 cut(s) 87, 192
BshFI GGCC 1 cut(s) 311
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 311
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 115
BspHI TCATGA 2 cut(s) 9, 70
BsrDI GCAATG 2 cut(s) 17, 198
BssECI CCNNGG 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 83, 137
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 32, 123
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 28, 285
BstNI CCWGG 2 cut(s) 83, 137
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 81, 135
BstV1I GCAGC 3 cut(s) 64, 88, 266
BsuRI GGCC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 2 cut(s) 9, 70
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 5 cut(s) 10, 50, 71, 98, 316
DdeI CTNAG 2 cut(s) 32, 123
Eco147I AGGCCT 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 81, 135
FaeI CATG 5 cut(s) 13, 53, 74, 101, 319
FaiI YATR 8 cut(s) 11, 51, 72, 99, 147, 180, 317, 332
FaqI GGGAC 1 cut(s) 148
FatI CATG 5 cut(s) 9, 49, 70, 97, 315
Fnu4HI GCNGC 3 cut(s) 78, 102, 280
Fsp4HI GCNGC 3 cut(s) 78, 102, 280
FspBI CTAG 1 cut(s) 204
GlaI GCGC 1 cut(s) 208
GluI GCNGC 3 cut(s) 78, 102, 280
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 311
HhaI GCGC 1 cut(s) 209
Hin1II CATG 5 cut(s) 13, 53, 74, 101, 319
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 248
HpaI GTTAAC 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 10, 71, 325
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 248, 301, 322
HpyCH4V TGCA 4 cut(s) 22, 104, 173, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 285
HpyF3I CTNAG 2 cut(s) 32, 123
Hsp92II CATG 5 cut(s) 13, 53, 74, 101, 319
HspAI GCGC 1 cut(s) 207
KspAI GTTAAC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 68, 95, 122, 149, 179, 216, 310
Lsp1109I GCAGC 3 cut(s) 64, 88, 266
MaeI CTAG 1 cut(s) 204
MluCI AATT 1 cut(s) 198
MnlI CCTC 2 cut(s) 17, 118
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 109
MspR9I CCNGG 2 cut(s) 83, 137
MvaI CCWGG 2 cut(s) 83, 137
MwoI GCNNNNNNNGC 2 cut(s) 28, 285
NlaIII CATG 5 cut(s) 13, 53, 74, 101, 319
NspI RCATGY 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 109
PaeI GCATGC 1 cut(s) 101
PagI TCATGA 2 cut(s) 9, 70
PceI AGGCCT 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 3 cut(s) 79, 103, 281
Psp6I CCWGG 2 cut(s) 81, 135
PspGI CCWGG 2 cut(s) 81, 135
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 78, 102, 280
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 83, 137
SetI ASST 6 cut(s) 9, 79, 87, 111, 156, 273
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 109
SphI GCATGC 1 cut(s) 101
Sse9I AATT 1 cut(s) 198
SseBI AGGCCT 1 cut(s) 311
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 81, 135
TasI AATT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 3 cut(s) 77, 101, 279
TspDTI ATGAA 2 cut(s) 87, 304
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.