AT1G15930

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002614
Physical Location & Seq
Forward (+)
5471316 .. 5473048
1733 bp
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UTR
Exon/CDS
Intron
AT1G15930.2

Sequence Viewer

Length: 435 bp
ATGTCAGGTGATGAGGCTGCCCCTGTTGTTGTTCCTCCCCCCGTTGCTGAGCCAGCGGCCATCCCAGAGGACATGGACTTAATGACTGCATTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTCCATGAGTGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAACTCGTTGTCTTGGCTGAAGACTGCAACCAGCCTGATTATGTCAAGCTTGTGAAGGCTCTCTGTGCTGATCACGAAGTCAGGTTGCTAACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTCTCTGCAAGATTGATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAGGACTTCGGCGAGGAGACAACTGCCCTCAGTATCGTCAATAAGCATATTGCTTCTCAATAA

Protein Analysis

144

Amino Acids

15.38

Weight (kDa)

5.38

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 30 - 123 1.4e-27 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 219
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 3 cut(s) 113, 160, 229
AluI AGCT 3 cut(s) 113, 160, 229
Alw26I GTCTC 3 cut(s) 146, 314, 383
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 20
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 340
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 3 cut(s) 146, 314, 383
BisI GCNGC 2 cut(s) 18, 57
BlpI GCTNAGC 2 cut(s) 48, 156
BlsI GCNGC 2 cut(s) 19, 58
Bme1390I CCNGG 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 207
Bpu1102I GCTNAGC 2 cut(s) 48, 156
BsaI GGTCTC 2 cut(s) 146, 314
BsaJI CCNNGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 60, 359
BseMII CTCAG 3 cut(s) 39, 318, 415
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 1 cut(s) 59
BsmAI GTCTC 3 cut(s) 146, 314, 383
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 2 cut(s) 146, 314
Bsp143I GATC 1 cut(s) 250
Bsp1720I GCTNAGC 2 cut(s) 48, 156
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 3 cut(s) 40, 319, 414
BspTNI GGTCTC 2 cut(s) 146, 314
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 5 cut(s) 48, 104, 156, 327, 401
BstF5I GGATG 2 cut(s) 60, 359
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 3 cut(s) 146, 314, 383
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 53, 245
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 60, 359
Cac8I GCNNGC 1 cut(s) 54
CviAII CATG 3 cut(s) 73, 146, 360
DdeI CTNAG 5 cut(s) 48, 104, 156, 327, 401
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 146, 314
Eco57I CTGAAG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 3 cut(s) 76, 149, 363
FaiI YATR 6 cut(s) 74, 123, 147, 222, 361, 420
FatI CATG 3 cut(s) 72, 145, 359
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 18, 57
FokI GGATG 2 cut(s) 47, 366
Fsp4HI GCNGC 2 cut(s) 18, 57
GluI GCNGC 2 cut(s) 18, 57
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 3 cut(s) 76, 149, 363
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 158, 227
HinfI GANTC 2 cut(s) 100, 323
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 229, 337
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 89, 207, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 245
HpyF3I CTNAG 5 cut(s) 48, 104, 156, 327, 401
Hsp92II CATG 3 cut(s) 76, 149, 363
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 9 cut(s) 36, 66, 78, 224, 228, 247, 291, 325, 352
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 1 cut(s) 344
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 6 cut(s) 7, 45, 61, 322, 379, 410
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 53, 245
NdeII GATC 1 cut(s) 250
NlaIII CATG 3 cut(s) 76, 149, 363
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 19, 58
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 2 cut(s) 18, 57
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 340
SetI ASST 6 cut(s) 10, 115, 162, 231, 266, 348
SfaNI GCATC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 150
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 274
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseI GCWGC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.