Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Reverse (-)

580618 .. 583185

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCAGGAGATGAAGCTGAGGTTCCTGTTACTGTTGAGCCTGTGGCTGTGGCTGCTGCTCCAGCTCTAGGTGAGCCCATGGACCTCATGACAGCATTGCAACTTGTGCTTAGGAAGTCATTGGCTCATGGTGGGCTTACACGGGGTCTACATGAAGCTGCCAAGGTCATTGAGAAGCATGCTGCACAGCTGTGCGTTTTGGCTGAGGACTGCGACCAGGCTGATTATGTGAAGCTTGTCAAGTCCCTGTGCGCAGAGCATAATGTTAACCTAATGACAATTCCTAGCGCCAAAACTCTTGGAGAATGGTCTGGGCTTTGCAAGATTGATTCTGAAGGAAAAGCAAGAAAGGTTGTTGGTTGCTCTTGCGTTGTTGTCAAGGATTTTGGTGAAGATACAGAAGGCCTTCATGTTGTTCAGGAGTATGTGAAGTCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

147

Amino Acids

15.52

Weight (kDa)

5.3

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	32 - 125	1.9e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	190
AluBI	AGCT	5 cut(s)	17, 65, 158, 190, 235
AluI	AGCT	5 cut(s)	17, 65, 158, 190, 235
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	4 cut(s)	53, 56, 158, 182
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	254, 290
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	83, 401
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	78
BbvCI	CCTCAGC	2 cut(s)	18, 204
BbvI	GCAGC	4 cut(s)	40, 43, 145, 169
BciT130I	CCWGG	1 cut(s)	218
BfaI	CTAG	2 cut(s)	68, 285
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	4 cut(s)	54, 57, 159, 183
BlsI	GCNGC	4 cut(s)	55, 58, 160, 184
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	3 cut(s)	18, 110, 204
BsaJI	CCNNGG	2 cut(s)	78, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	78, 162
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	9, 195
BseXI	GCAGC	4 cut(s)	40, 43, 145, 169
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	405
BslFI	GGGAC	2 cut(s)	229, 418
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	229, 418
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp19I	CCATGG	1 cut(s)	78
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	10, 196
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	78, 162
BssT1I	CCWWGG	2 cut(s)	78, 162
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	18, 110, 204
BstDSI	CCRYGG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	254, 290
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 62, 106
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	4 cut(s)	40, 43, 145, 169
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	180
CciI	TCATGA	1 cut(s)	87
CfoI	GCGC	2 cut(s)	254, 290
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	6 cut(s)	79, 88, 128, 152, 179, 410
DdeI	CTNAG	3 cut(s)	18, 110, 204
Eco130I	CCWWGG	2 cut(s)	78, 162
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	78, 162
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	78, 162
FaeI	CATG	6 cut(s)	82, 91, 131, 155, 182, 413
FaiI	YATR	9 cut(s)	80, 89, 129, 153, 180, 228, 261, 411, 426
FaqI	GGGAC	2 cut(s)	229, 418
FatI	CATG	6 cut(s)	78, 87, 127, 151, 178, 409
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	54, 57, 159, 183
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	54, 57, 159, 183
FspBI	CTAG	2 cut(s)	68, 285
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	2 cut(s)	253, 289
GluI	GCNGC	4 cut(s)	54, 57, 159, 183
GsuI	CTGGAG	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	405
HhaI	GCGC	2 cut(s)	254, 290
Hin1II	CATG	6 cut(s)	82, 91, 131, 155, 182, 413
Hin6I	GCGC	2 cut(s)	252, 288
HinP1I	GCGC	2 cut(s)	252, 288
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	329
HpaI	GTTAAC	1 cut(s)	268
HphI	GGTGA	2 cut(s)	83, 401
Hpy166II	GTNNAC	2 cut(s)	149, 268
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	3 cut(s)	6, 88, 419
Hpy8I	GTNNAC	2 cut(s)	149, 268
HpyAV	CCTTC	3 cut(s)	329, 395, 416
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	100, 185, 321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 62, 106
HpyF3I	CTNAG	3 cut(s)	18, 110, 204
Hsp92II	CATG	6 cut(s)	82, 91, 131, 155, 182, 413
HspAI	GCGC	2 cut(s)	252, 288
KspAI	GTTAAC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	8 cut(s)	39, 54, 75, 203, 230, 260, 297, 404
Lsp1109I	GCAGC	4 cut(s)	40, 43, 145, 169
MaeI	CTAG	2 cut(s)	68, 285
MaeIII	GTNAC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	279
MnlI	CCTC	3 cut(s)	13, 95, 199
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	2 cut(s)	267, 439
MslI	CAYNNNNRTG	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	53, 62, 106
NcoI	CCATGG	1 cut(s)	78
NlaIII	CATG	6 cut(s)	82, 91, 131, 155, 182, 413
NlaIV	GGNNCC	1 cut(s)	24
NsbI	TGCGCA	1 cut(s)	253
NspI	RCATGY	1 cut(s)	182
OliI	CACNNNNGTG	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	55, 58, 160, 184
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	267, 439
SatI	GCNGC	4 cut(s)	54, 57, 159, 183
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	78
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	190
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	1 cut(s)	279
SseBI	AGGCCT	1 cut(s)	405
SspMI	CTAG	2 cut(s)	68, 285
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	78, 162
TaaI	ACNGT	1 cut(s)	34
TasI	AATT	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	267, 439
Tru9I	TTAA	2 cut(s)	267, 439
TseI	GCWGC	4 cut(s)	53, 56, 158, 182
TspDTI	ATGAA	3 cut(s)	27, 168, 398
VpaK11BI	GGWCC	1 cut(s)	82
XceI	RCATGY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	68, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.