Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000127.1

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Forward (+)

5917 .. 8077

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000127.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgtttggggagcttgtagttagcagtaatggttcccctgcaccaacaaagaaagtgaatacgcttgtagcctcaatcaagctttcggccaagtcgttgggactggtagaaacattgggtgggatgcttgttcctgcagaagtgatgctgcctctgggagttgtcccaaatgactctactatcaagaagaaaaggggaaggccattgggatccataaataagaatcctcccaagacaaagaaacaagtatctgctgaagatgtacctctctttgcattcggctgcctcatctcatctcaatcaatcttcaagtttcaaacatcaagaggaaagatgtcaggtgatgaagcacccgcaccagttgtagctgaagcacctgctccagcccttggcgagcctatggatatcatgacagctgtgcagcttgtgctgagaaaatcgctggctcatggtgggcttgttagaggtcttcatgaagctgcaaaggttgttgagaagcatgctgcccagctctgtgtcctggccgaggactgtgaccagcaagactatgttaaactagtcaagggtctttgtgctgagcacaacgtaaacatgttgactgttcccaatgccaagaccctaggagagtgggctggtttgtgcaagatcgactccgagggcaaggctaggaaggttgttggttgctcatgtgttgttgtgaaggattttggagaggatcatgaggctctccatgttgttcagcagcatgtcaaggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

252

Amino Acids

26.65

Weight (kDa)

8.78

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	389
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	3 cut(s)	204, 217, 723
AcoI	YGGCCR	2 cut(s)	87, 522
AcuI	CTGAAG	2 cut(s)	276, 390
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	389, 526
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	2 cut(s)	310, 317
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	7 cut(s)	13, 82, 368, 416, 424, 479, 511
AluI	AGCT	7 cut(s)	13, 82, 368, 416, 424, 479, 511
Alw21I	GWGCWC	1 cut(s)	582
AlwI	GGATC	3 cut(s)	204, 217, 723
AoxI	GGCC	4 cut(s)	87, 200, 522, 753
ApeKI	GCWGC	6 cut(s)	148, 282, 421, 479, 503, 742
AspA2I	CCTAGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	353
AvrII	CCTAGG	1 cut(s)	619
BamHI	GGATCC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	6 cut(s)	135, 269, 433, 466, 490, 754
BciT130I	CCWGG	1 cut(s)	521
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	3 cut(s)	557, 620, 666
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	6 cut(s)	149, 283, 422, 480, 504, 743
BlnI	CCTAGG	1 cut(s)	619
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	6 cut(s)	150, 284, 423, 481, 505, 744
Bme1390I	CCNGG	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	34, 211
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	2 cut(s)	114, 135
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	576
BsaJI	CCNNGG	4 cut(s)	388, 525, 619, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 526
Bse1I	ACTGG	2 cut(s)	108, 359
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	4 cut(s)	388, 525, 619, 654
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	389, 526
BseMII	CTCAG	2 cut(s)	422, 567
BseNI	ACTGG	2 cut(s)	108, 359
BseXI	GCAGC	6 cut(s)	135, 269, 433, 466, 490, 754
BseYI	CCCAGC	1 cut(s)	507
BsgI	GTGCAG	2 cut(s)	24, 440
BshFI	GGCC	4 cut(s)	89, 202, 524, 755
BsiHKAI	GWGCWC	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	114, 149
BslI	CCNNNNNNNGG	2 cut(s)	389, 526
BsmFI	GGGAC	2 cut(s)	114, 149
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	4 cut(s)	89, 202, 524, 755
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	209, 645, 715
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	4 cut(s)	89, 202, 524, 755
BspCNI	CTCAG	2 cut(s)	423, 568
BspHI	TCATGA	3 cut(s)	408, 472, 718
BspLI	GGNNCC	2 cut(s)	34, 211
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	3 cut(s)	204, 217, 723
BsrI	ACTGG	2 cut(s)	108, 359
BssECI	CCNNGG	4 cut(s)	388, 525, 619, 654
BssMI	GATC	3 cut(s)	209, 645, 715
BssT1I	CCWWGG	2 cut(s)	388, 619
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	533, 601
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	395, 444, 501
BstDEI	CTNAG	2 cut(s)	431, 576
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	212, 648, 718
BstMBI	GATC	3 cut(s)	209, 645, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	3 cut(s)	503, 595, 749
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	6 cut(s)	135, 269, 433, 466, 490, 754
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	4 cut(s)	89, 202, 524, 755
BtsCI	GGATG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	3 cut(s)	395, 444, 501
CciI	TCATGA	3 cut(s)	408, 472, 718
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	9 cut(s)	409, 449, 473, 500, 592, 687, 719, 731, 746
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	431, 576
DpnI	GATC	3 cut(s)	211, 647, 717
DpnII	GATC	3 cut(s)	209, 645, 715
EaeI	YGGCCR	2 cut(s)	87, 522
Eco130I	CCWWGG	2 cut(s)	388, 619
Eco147I	AGGCCT	1 cut(s)	755
Eco32I	GATATC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	276, 390
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	388, 619
ErhI	CCWWGG	2 cut(s)	388, 619
FaeI	CATG	9 cut(s)	412, 452, 476, 503, 595, 690, 722, 734, 749
FaqI	GGGAC	2 cut(s)	114, 149
FatI	CATG	9 cut(s)	408, 448, 472, 499, 591, 686, 718, 730, 745
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	6 cut(s)	149, 283, 422, 480, 504, 743
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	6 cut(s)	149, 283, 422, 480, 504, 743
FspBI	CTAG	3 cut(s)	557, 620, 666
GluI	GCNGC	6 cut(s)	149, 283, 422, 480, 504, 743
GsaI	CCCAGC	1 cut(s)	511
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	89, 202, 524, 755
Hin1II	CATG	9 cut(s)	412, 452, 476, 503, 595, 690, 722, 734, 749
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	173, 223, 650
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	589, 597
Hpy188I	TCNGA	1 cut(s)	655
Hpy188III	TCNNGA	5 cut(s)	184, 324, 409, 473, 719
Hpy8I	GTNNAC	2 cut(s)	589, 597
HpyAV	CCTTC	3 cut(s)	192, 664, 694
HpyCH4III	ACNGT	2 cut(s)	533, 601
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	6 cut(s)	41, 137, 275, 421, 482, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	2 cut(s)	431, 576
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	9 cut(s)	412, 452, 476, 503, 595, 690, 722, 734, 749
Kzo9I	GATC	3 cut(s)	209, 645, 715
LmnI	GCTCC	2 cut(s)	10, 385
Lsp1109I	GCAGC	6 cut(s)	135, 269, 433, 466, 490, 754
LweI	GCATC	2 cut(s)	114, 135
MaeI	CTAG	3 cut(s)	557, 620, 666
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	211, 647, 717
MboI	GATC	3 cut(s)	209, 645, 715
MboII	GAAGA	4 cut(s)	199, 269, 298, 461
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	582
MlyI	GAGTC	2 cut(s)	167, 644
MseI	TTAA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	427
NdeII	GATC	3 cut(s)	209, 645, 715
NlaIII	CATG	9 cut(s)	412, 452, 476, 503, 595, 690, 722, 734, 749
NlaIV	GGNNCC	2 cut(s)	34, 211
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	3 cut(s)	503, 595, 749
PaeI	GCATGC	1 cut(s)	503
PagI	TCATGA	3 cut(s)	408, 472, 718
PaqCI	CACCTGC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	755
PciI	ACATGT	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	6 cut(s)	150, 284, 423, 481, 505, 744
PleI	GAGTC	2 cut(s)	167, 644
PpsI	GAGTC	2 cut(s)	167, 644
PscI	ACATGT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	34, 211
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	6 cut(s)	149, 283, 422, 480, 504, 743
Sau3AI	GATC	3 cut(s)	209, 645, 715
SchI	GAGTC	2 cut(s)	167, 644
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	2 cut(s)	114, 135
SfcI	CTRYAG	1 cut(s)	135
SpeI	ACTAGT	1 cut(s)	556
SphI	GCATGC	1 cut(s)	503
SseBI	AGGCCT	1 cut(s)	755
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	3 cut(s)	557, 620, 666
StuI	AGGCCT	1 cut(s)	755
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	388, 619
TaaI	ACNGT	2 cut(s)	533, 601
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	648
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	6 cut(s)	148, 282, 421, 479, 503, 742
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	360, 461, 489
Van91I	CCANNNNNTGG	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	524
XceI	RCATGY	3 cut(s)	503, 595, 749
XmaJI	CCTAGG	1 cut(s)	619
XspI	CTAG	3 cut(s)	557, 620, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.