Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Reverse (-)

13638762 .. 13640431

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCAGGTGATGAGGCTGTTGCTGCTCCTGTGGTTCCTCCTGTTGCTGAGGCAGCAGTGATCCCAGAGGACATGGATGTGAGTACTGCATTGGAGTTGACTGTAAGGAAATCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTCCATGAAAGCGCTAAGCTTATTGAGAAGCGTAATGCTCAGCTCTGTGTCCTGGCTGAAGATTGCAACCAACCTGATTATGTCAAGCTTGTTAAAGCTCTTTGCGCTGACCACAGCATCAAATTGCTTACTGTTCCAAGTGCCAAAACACTCGGCGAATGGGCTGGTCTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGATTCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

144

Amino Acids

15.33

Weight (kDa)

5.62

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	30 - 123	7.7e-28	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	85
AfeI	AGCGCT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	4 cut(s)	160, 184, 229, 239
AluI	AGCT	4 cut(s)	160, 184, 229, 239
Alw26I	GTCTC	3 cut(s)	146, 368, 383
AlwI	GGATC	1 cut(s)	55
Aor51HI	AGCGCT	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	23, 53
AspLEI	GCGC	2 cut(s)	155, 248
AsuHPI	GGTGA	2 cut(s)	20, 395
BauI	CACGAG	2 cut(s)	114, 365
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	10, 65
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	146, 368, 383
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	2 cut(s)	24, 54
BlpI	GCTNAGC	2 cut(s)	156, 180
BlsI	GCNGC	2 cut(s)	25, 55
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	3 cut(s)	267, 344, 427
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	2 cut(s)	156, 180
BsaI	GGTCTC	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	82, 359
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	3 cut(s)	39, 194, 318
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	10, 65
BsgI	GTGCAG	1 cut(s)	381
BsmAI	GTCTC	3 cut(s)	146, 368, 383
Bso31I	GGTCTC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	60, 369
Bsp1720I	GCTNAGC	2 cut(s)	156, 180
BspCNI	CTCAG	3 cut(s)	40, 193, 319
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	340
BssMI	GATC	2 cut(s)	60, 369
BssSI	CACGAG	2 cut(s)	114, 365
Bst2BI	CACGAG	2 cut(s)	114, 365
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	103, 274
BstDEI	CTNAG	4 cut(s)	48, 156, 180, 327
BstF5I	GGATG	2 cut(s)	82, 359
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	155, 248
BstKTI	GATC	2 cut(s)	63, 372
BstMAI	GTCTC	3 cut(s)	146, 368, 383
BstMBI	GATC	2 cut(s)	60, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 53, 245
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	10, 65
BtsCI	GGATG	2 cut(s)	82, 359
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
CfoI	GCGC	2 cut(s)	155, 248
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	3 cut(s)	73, 146, 360
CviJI	RGCY	7 cut(s)	17, 160, 184, 197, 229, 239, 305
CviKI_1	RGCY	7 cut(s)	17, 160, 184, 197, 229, 239, 305
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	4 cut(s)	48, 156, 180, 327
DpnI	GATC	2 cut(s)	62, 371
DpnII	GATC	2 cut(s)	60, 369
Eco31I	GGTCTC	1 cut(s)	146
Eco47III	AGCGCT	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	76, 149, 363
FaiI	YATR	5 cut(s)	74, 123, 147, 222, 361
FatI	CATG	3 cut(s)	72, 145, 359
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	24, 54
FokI	GGATG	2 cut(s)	89, 366
Fsp4HI	GCNGC	2 cut(s)	24, 54
GlaI	GCGC	2 cut(s)	154, 247
GluI	GCNGC	2 cut(s)	24, 54
HaeII	RGCGCY	1 cut(s)	156
HhaI	GCGC	2 cut(s)	155, 248
Hin1II	CATG	3 cut(s)	76, 149, 363
Hin6I	GCGC	2 cut(s)	153, 246
HinP1I	GCGC	2 cut(s)	153, 246
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	158, 227
HinfI	GANTC	2 cut(s)	323, 425
HphI	GGTGA	2 cut(s)	20, 395
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	3 cut(s)	367, 412, 422
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	103, 274
HpyCH4V	TGCA	5 cut(s)	89, 207, 315, 338, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 53, 245
HpyF3I	CTNAG	4 cut(s)	48, 156, 180, 327
Hsp92II	CATG	3 cut(s)	76, 149, 363
HspAI	GCGC	2 cut(s)	153, 246
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	60, 369
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	7 cut(s)	42, 54, 78, 179, 206, 228, 291
Lsp1109I	GCAGC	2 cut(s)	10, 65
LweI	GCATC	3 cut(s)	267, 344, 427
MalI	GATC	2 cut(s)	62, 371
MboI	GATC	2 cut(s)	60, 369
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	6 cut(s)	7, 43, 48, 61, 322, 379
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	23, 53, 245
NdeII	GATC	2 cut(s)	60, 369
NlaIII	CATG	3 cut(s)	76, 149, 363
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	323, 425
PkrI	GCNGC	2 cut(s)	25, 55
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	24, 54
Sau3AI	GATC	2 cut(s)	60, 369
ScaI	AGTACT	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	7 cut(s)	10, 162, 186, 217, 231, 241, 348
SfaNI	GCATC	3 cut(s)	267, 344, 427
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	103, 274
TasI	AATT	1 cut(s)	263
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	323, 425
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	2 cut(s)	23, 53
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.