Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002614

Physical Location & Seq

Genomic Coordinates Forward (+)

21671230 .. 21674113

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G260600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGTGGCAAACCGCTGAATTATAGTTGTGTGCCTCTAGGGACCTTTTGTTTTGGACTGTGGGAGTATGTAATGGATGAAGAAGAAGAAGTTGTTGTTGCTGCTGAGCCTGCTGCTGCTGCTGCTGTTCCAGCTCTAGGTGAGCCCATGGACCTTTTGACAGCATTGCAACTTGTGCTGAGAAAGTCGTTGGCTCATGGTGGGCTCACACGTGGACTCCACGAAGGTGCAAAGGTCATCGAGAAGCACGCTGCACAGCTCTGTGTGTTAGCTGAGGACTGTGATCAGGCCGATTATGTCAAGCTGGTCAAGGCGCTATGTGCTGACCATAATGTTAAATTGATATCAATTCCTAGTGCTAAAACTCTTGGAGAATGGTCTGGTCTTTGTAAGATTGATTCAGAGGGAAAGGCTAGAAAGGTTGTTGGTTGCTCTTGCGTTGTTGTGAAGGATTATGGGGAAGATACAGAAGGCCTTCATGTTGTTCAGGAGTACGTGAAGTCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

170

Amino Acids

18.13

Weight (kDa)

5.2

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15930 AT1G15930 AT2G32060 AT2G32060 AT2G32060
fragaria_vesca	FvH4_1g01120 FvH4_1g01120 FvH4_1g01120 FvH4_1g01140 FvH4_6g28730
malus_domestica	MD02G1009400.v1.1 MD02G1009500.v1.1 MD15G1154900.v1.1 MD15G1155000.v1.1
prunus_persica	Prupe.3G097200_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1 Prupe.7G260600_v2.0.a1
pyrus_communis	pycom02g00840 pycom15g13840 pycom15g13850
rosa_chinensis	RchiOBHm_Chr2g0085931 RchiOBHm_Chr2g0133131
rosa_laevigata	RLG00000019310
rosa_multiflora	Rmu_sc0000127.1_g000001 Rmu_sc0001748.1_g000002 Rmu_sc0008365.1_g000004 Rmu_sc0026593.1_g000005 Rmu_ssc0000355.1_g000029
rosa_roxburghii	Rroxscaffold_2G00111370 Rroxscaffold_2G00154920
rosa_rugosa	Rorug01G0464400 Rorug02G0310300
rosa_samantha	Rh2AG013400 Rh2AG362400 Rh2CG014600 Rh2CG345600 Rh2DG385200
rosa_wichuraiana	Rw2G001200 Rw2G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AcvI	CACGTG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	209
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	4 cut(s)	134, 259, 272, 304
AluI	AGCT	4 cut(s)	134, 259, 272, 304
AoxI	GGCC	2 cut(s)	288, 472
ApeKI	GCWGC	6 cut(s)	101, 113, 116, 119, 122, 251
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	42, 151
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	42, 151
BanII	GRGCYC	2 cut(s)	147, 207
BbrPI	CACGTG	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	6 cut(s)	88, 100, 103, 106, 109, 238
BclI	TGATCA	1 cut(s)	283
BfaI	CTAG	4 cut(s)	38, 137, 354, 414
BfoI	RGCGCY	1 cut(s)	317
BisI	GCNGC	6 cut(s)	102, 114, 117, 120, 123, 252
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	6 cut(s)	103, 115, 118, 121, 124, 253
Bme18I	GGWCC	2 cut(s)	42, 151
BmgT120I	GGNCC	2 cut(s)	42, 151
BmiI	GGNNCC	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	105
BsaAI	YACGTR	2 cut(s)	212, 496
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	96, 170, 264
BseXI	GCAGC	6 cut(s)	88, 100, 103, 106, 109, 238
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	290, 474
BslFI	GGGAC	2 cut(s)	55, 487
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	55, 487
BsnI	GGCC	2 cut(s)	290, 474
Bsp1286I	GDGCHC	2 cut(s)	147, 207
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	290, 474
BspCNI	CTCAG	3 cut(s)	97, 171, 265
BspLI	GGNNCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	60, 281
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstBAI	YACGTR	2 cut(s)	212, 496
BstC8I	GCNNGC	2 cut(s)	111, 249
BstDEI	CTNAG	3 cut(s)	105, 179, 273
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 119, 122, 131, 175, 320
BstV1I	GCAGC	6 cut(s)	88, 100, 103, 106, 109, 238
BsuRI	GGCC	2 cut(s)	290, 474
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	111, 249
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	42, 151
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	148, 197, 479
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	105, 179, 273
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	474
Eco24I	GRGCYC	2 cut(s)	147, 207
Eco32I	GATATC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	42, 151
Eco72I	CACGTG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	147, 207
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	151, 200, 482
FaiI	YATR	9 cut(s)	24, 69, 149, 198, 297, 319, 330, 456, 480
FaqI	GGGAC	2 cut(s)	55, 487
FatI	CATG	3 cut(s)	147, 196, 478
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	6 cut(s)	102, 114, 117, 120, 123, 252
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	2 cut(s)	147, 207
Fsp4HI	GCNGC	6 cut(s)	102, 114, 117, 120, 123, 252
FspBI	CTAG	4 cut(s)	38, 137, 354, 414
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	6 cut(s)	102, 114, 117, 120, 123, 252
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	290, 474
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	151, 200, 482
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	2 cut(s)	216, 398
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	2 cut(s)	241, 488
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	218, 442, 464, 485
HpyCH4III	ACNGT	2 cut(s)	60, 281
HpyCH4IV	ACGT	2 cut(s)	211, 495
HpyCH4V	TGCA	3 cut(s)	169, 230, 254
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 119, 122, 131, 175, 320
HpyF3I	CTNAG	3 cut(s)	105, 179, 273
HpySE526I	ACGT	2 cut(s)	211, 495
Hsp92II	CATG	3 cut(s)	151, 200, 482
HspAI	GCGC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	123, 144, 272, 290, 366, 473
Lsp1109I	GCAGC	6 cut(s)	88, 100, 103, 106, 109, 238
MaeI	CTAG	4 cut(s)	38, 137, 354, 414
MaeII	ACGT	2 cut(s)	211, 495
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	4 cut(s)	92, 95, 98, 473
MhlI	GDGCHC	2 cut(s)	147, 207
MluCI	AATT	3 cut(s)	19, 338, 348
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	45, 268, 397
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	336, 508
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	16
MwoI	GCNNNNNNNGC	6 cut(s)	110, 119, 122, 131, 175, 320
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	151, 200, 482
NlaIV	GGNNCC	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	6 cut(s)	103, 115, 118, 121, 124, 253
PleI	GAGTC	1 cut(s)	210
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	210
Ppu21I	YACGTR	2 cut(s)	212, 496
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
PspCI	CACGTG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	42, 151
PspPPI	RGGWCCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	336, 508
SatI	GCNGC	6 cut(s)	102, 114, 117, 120, 123, 252
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	2 cut(s)	42, 151
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	147, 207
SinI	GGWCC	2 cut(s)	42, 151
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	19, 338, 348
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	4 cut(s)	38, 137, 354, 414
StuI	AGGCCT	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	60, 281
TaiI	ACGT	2 cut(s)	214, 498
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	19, 338, 348
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	336, 508
Tru9I	TTAA	2 cut(s)	336, 508
TseI	GCWGC	6 cut(s)	101, 113, 116, 119, 122, 251
TspDTI	ATGAA	2 cut(s)	93, 467
VpaK11BI	GGWCC	2 cut(s)	42, 151
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	4 cut(s)	38, 137, 354, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.