Rh2AG362400

Belongs to the eukaryotic ribosomal protein eS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002614
Physical Location & Seq
Reverse (-)
53714814 .. 53716788
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG362400.1

Sequence Viewer

Length: 360 bp
ATGGATATCATGACAGCTGTGCAGCTTGTGCTGAGAAAATCGCTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAAGCTGCAAAGGTTGTTGAGAAGCATGCTGCCCAGCTCTGTGTCCTGGCCGAGGACTGTGACCAGCAAGACTATGTTAAACTAGTCAAGGGTCTTTGTGCTGAGCACAACGTAAACATGTTGACTGTTCCCAATGCCAAGACCCTAGGAGAGTGGGCTGGTTTGTGCAAGATCGACTCCGAGGGCAAGGCTAGGAAGGTTGTTGGTTGCTCATGTGTTGTTGTGAAGGATTTTGGAGAGGATCATGAAGCTCTCCATGTTGTTCAGCAGCATGTCAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

119

Amino Acids

12.9

Weight (kDa)

6.64

Isoelectric Point (pI)

17.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 6 - 99 6.7e-27 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 192
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 5 cut(s) 17, 25, 80, 112, 326
AluI AGCT 5 cut(s) 17, 25, 80, 112, 326
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 324
AoxI GGCC 2 cut(s) 123, 354
ApeKI GCWGC 4 cut(s) 22, 80, 104, 343
AspA2I CCTAGG 1 cut(s) 220
AvrII CCTAGG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 34, 67, 91, 355
BciT130I CCWGG 1 cut(s) 122
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 3 cut(s) 158, 221, 267
BisI GCNGC 4 cut(s) 23, 81, 105, 344
BlnI CCTAGG 1 cut(s) 220
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 4 cut(s) 24, 82, 106, 345
Bme1390I CCNGG 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 126, 220, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 126, 220, 255
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 23, 168
BseXI GCAGC 4 cut(s) 34, 67, 91, 355
BseYI CCCAGC 1 cut(s) 108
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 2 cut(s) 125, 356
BsiHKAI GWGCWC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 2 cut(s) 125, 356
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 246, 316
Bsp1720I GCTNAGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 125, 356
BspCNI CTCAG 2 cut(s) 24, 169
BspHI TCATGA 3 cut(s) 9, 73, 319
BspPI GGATC 1 cut(s) 324
BssECI CCNNGG 3 cut(s) 126, 220, 255
BssMI GATC 2 cut(s) 246, 316
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 134, 202
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 45, 102
BstDEI CTNAG 2 cut(s) 32, 177
BstENI CCTNNNNNAGG 1 cut(s) 125
BstKTI GATC 2 cut(s) 249, 319
BstMBI GATC 2 cut(s) 246, 316
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 3 cut(s) 104, 196, 350
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 34, 67, 91, 355
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 125, 356
Cac8I GCNNGC 2 cut(s) 45, 102
CciI TCATGA 3 cut(s) 9, 73, 319
CviAII CATG 9 cut(s) 10, 50, 74, 101, 193, 288, 320, 332, 347
DdeI CTNAG 2 cut(s) 32, 177
DpnI GATC 2 cut(s) 248, 318
DpnII GATC 2 cut(s) 246, 316
EaeI YGGCCR 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 356
Eco32I GATATC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 9 cut(s) 13, 53, 77, 104, 196, 291, 323, 335, 350
FatI CATG 9 cut(s) 9, 49, 73, 100, 192, 287, 319, 331, 346
Fnu4HI GCNGC 4 cut(s) 23, 81, 105, 344
Fsp4HI GCNGC 4 cut(s) 23, 81, 105, 344
FspBI CTAG 3 cut(s) 158, 221, 267
GluI GCNGC 4 cut(s) 23, 81, 105, 344
GsaI CCCAGC 1 cut(s) 112
HaeIII GGCC 2 cut(s) 125, 356
Hin1II CATG 9 cut(s) 13, 53, 77, 104, 196, 291, 323, 335, 350
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 190, 198
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 3 cut(s) 10, 74, 320
Hpy8I GTNNAC 2 cut(s) 190, 198
HpyAV CCTTC 2 cut(s) 265, 295
HpyCH4III ACNGT 2 cut(s) 134, 202
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 22, 83, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 2 cut(s) 32, 177
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 9 cut(s) 13, 53, 77, 104, 196, 291, 323, 335, 350
Kzo9I GATC 2 cut(s) 246, 316
LpnPI CCDG 6 cut(s) 29, 107, 122, 134, 152, 219
Lsp1109I GCAGC 4 cut(s) 34, 67, 91, 355
MaeI CTAG 3 cut(s) 158, 221, 267
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 248, 318
MboI GATC 2 cut(s) 246, 316
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 183
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 4 cut(s) 59, 121, 250, 307
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 2 cut(s) 246, 316
NlaIII CATG 9 cut(s) 13, 53, 77, 104, 196, 291, 323, 335, 350
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 3 cut(s) 104, 196, 350
PaeI GCATGC 1 cut(s) 104
PagI TCATGA 3 cut(s) 9, 73, 319
PceI AGGCCT 1 cut(s) 356
PciI ACATGT 1 cut(s) 192
PkrI GCNGC 4 cut(s) 24, 82, 106, 345
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PscI ACATGT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 4 cut(s) 23, 81, 105, 344
Sau3AI GATC 2 cut(s) 246, 316
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 183
SetI ASST 9 cut(s) 19, 27, 70, 82, 90, 114, 189, 276, 328
SpeI ACTAGT 1 cut(s) 157
SphI GCATGC 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 356
SspMI CTAG 3 cut(s) 158, 221, 267
StuI AGGCCT 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 134, 202
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 64, 249
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 4 cut(s) 22, 80, 104, 343
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 62, 90, 336
XagI CCTNNNNNAGG 1 cut(s) 125
XceI RCATGY 3 cut(s) 104, 196, 350
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 3 cut(s) 158, 221, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.