Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013481

Physical Location & Seq

Genomic Coordinates Reverse (-)

10777068 .. 10779264

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGACGATGACGTCGATCATCAGATCCAGTCCTACTCTCGCTTTCATCGTCTTACAGATTTGCTTCATCTTCTTTGCTTCCACTTTCCCTTGCTCTTCTGGGTCTGAGGATAGTTACACCATTACTGGTAGAGTCAAGATTCCACCAAGCAACGTGATTGGTCACATAGCAAAGTTCTCAAATGTCAAAGTTATACTCAATGGTGGACAGAAGATTACGTTTCTCAGGCCTGATGGATACTTTACTTTTCATGAAGTGCCTGCTGGGACTCATTTGATTGAAGTATCAGCAATGGGTTACTTCTTTTCTCCGGTACGAGTAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAAGGAAGAGCAATATTATGAGATTCGAGAGCCTTTCAACATTATGTCGATCGTGAAAAGTCCAATGGGTCTCATGGTGGGATTCATGGTCGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAAACATAGATCCAGAGGAGATGAAGCAAGCACAAGAGGAAATGAGGAGACAAGGCGTGCCTTCGCTCACAAGCTTGTTACCAGGCGCTGGGGCTAGCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2012

Protein Analysis

210

Amino Acids

23.43

Weight (kDa)

8.57

Isoelectric Point (pI)

63.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC7_beta-sandw	PF09430	59 - 161	2.2e-22	ER membrane protein complex subunit 7, beta-sandwich domain
CarbopepD_reg_2	PF13715	60 - 132	9.9e-06	CarboxypepD_reg-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25310 AT4G32130
fragaria_vesca	FvH4_2g28770
malus_domestica	MD08G1157200.v1.1 MD15G1128300.v1.1
prunus_persica	Prupe.1G483600_v2.0.a1
pyrus_communis	pycom15g11550
rosa_chinensis	RchiOBHm_Chr6g0297531
rosa_laevigata	RLG00000011586
rosa_multiflora	Rmu_sc0003740.1_g000001 Rmu_ssc0000319.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170390
rosa_rugosa	Rorug06G0273300
rosa_samantha	Rh6AG384300 Rh6BG392400 Rh6CG398300 Rh6DG384800
rosa_wichuraiana	Rw6G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AatII	GACGTC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	2 cut(s)	18, 533
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	4 cut(s)	281, 353, 409, 445
AjnI	CCWGG	2 cut(s)	371, 610
AluBI	AGCT	2 cut(s)	391, 603
AluI	AGCT	2 cut(s)	391, 603
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	482, 571
AlwI	GGATC	2 cut(s)	18, 533
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	227
AseI	ATTAAT	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	617
AsuNHI	GCTAGC	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	334
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	373, 612
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	482, 571
BfaI	CTAG	1 cut(s)	624
BfoI	RGCGCY	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	373, 612
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	2 cut(s)	373, 612
BmsI	GCATC	1 cut(s)	346
BmtI	GCTAGC	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	2 cut(s)	27, 130
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	373, 612
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	96, 238, 378
BseNI	ACTGG	2 cut(s)	27, 130
BseRI	GAGGAG	3 cut(s)	391, 560, 589
BseYI	CCCAGC	2 cut(s)	263, 617
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	2 cut(s)	482, 571
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	15, 23, 456, 538
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	3 cut(s)	97, 237, 379
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	402
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	18, 533
BspQI	GCTCTTC	2 cut(s)	100, 408
BspTNI	GGTCTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	27, 130
BssMI	GATC	4 cut(s)	15, 23, 456, 538
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	373, 612
Bst6I	CTCTTC	2 cut(s)	100, 408
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	261, 558, 587, 625
BstDEI	CTNAG	3 cut(s)	105, 224, 387
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	4 cut(s)	18, 26, 459, 541
BstMAI	GTCTC	2 cut(s)	482, 571
BstMBI	GATC	4 cut(s)	15, 23, 456, 538
BstMCI	CGRYCG	1 cut(s)	459
BstNI	CCWGG	2 cut(s)	373, 612
BstSCI	CCNGG	2 cut(s)	371, 610
BstX2I	RGATCY	2 cut(s)	23, 538
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	2 cut(s)	23, 538
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	229
Cac8I	GCNNGC	4 cut(s)	261, 558, 587, 625
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	3 cut(s)	251, 481, 493
CviJI	RGCY	7 cut(s)	229, 391, 403, 439, 603, 623, 627
CviKI_1	RGCY	7 cut(s)	229, 391, 403, 439, 603, 623, 627
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	3 cut(s)	105, 224, 387
DpnI	GATC	4 cut(s)	17, 25, 458, 540
DpnII	GATC	4 cut(s)	15, 23, 456, 538
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	100, 408
EarI	CTCTTC	2 cut(s)	100, 408
Eco147I	AGGCCT	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	371, 610
FaeI	CATG	3 cut(s)	254, 484, 496
FaiI	YATR	8 cut(s)	167, 194, 252, 426, 452, 482, 494, 536
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	3 cut(s)	250, 480, 492
Fnu4HI	GCNGC	1 cut(s)	628
Fsp4HI	GCNGC	1 cut(s)	628
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	1 cut(s)	628
GsaI	CCCAGC	2 cut(s)	267, 621
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	1 cut(s)	617
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	254, 484, 496
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	6 cut(s)	132, 139, 268, 379, 430, 489
HpaII	CCGG	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	23, 106
Hpy188III	TCNNGA	5 cut(s)	136, 251, 434, 460, 542
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	403, 600
HpyCH4IV	ACGT	3 cut(s)	11, 153, 218
HpyF3I	CTNAG	3 cut(s)	105, 224, 387
HpySE526I	ACGT	3 cut(s)	11, 153, 218
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	254, 484, 496
HspAI	GCGC	1 cut(s)	615
Kzo9I	GATC	4 cut(s)	15, 23, 456, 538
LguI	GCTCTTC	2 cut(s)	100, 408
LmnI	GCTCC	1 cut(s)	400
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	3 cut(s)	11, 153, 218
MaeIII	GTNAC	4 cut(s)	113, 161, 296, 606
MalI	GATC	4 cut(s)	17, 25, 458, 540
MboI	GATC	4 cut(s)	15, 23, 456, 538
MboII	GAAGA	4 cut(s)	61, 87, 223, 425
MflI	RGATCY	2 cut(s)	23, 538
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	1 cut(s)	521
MlyI	GAGTC	3 cut(s)	141, 262, 388
MnlI	CCTC	5 cut(s)	100, 369, 538, 559, 567
MseI	TTAA	1 cut(s)	524
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	373, 612
MvaI	CCWGG	2 cut(s)	373, 612
NdeII	GATC	4 cut(s)	15, 23, 456, 538
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	3 cut(s)	254, 484, 496
NlaIV	GGNNCC	1 cut(s)	402
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	161
PagI	TCATGA	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	229
PciSI	GCTCTTC	2 cut(s)	100, 408
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 45
PfeI	GAWTC	3 cut(s)	139, 430, 489
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	629
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	3 cut(s)	140, 262, 387
PpsI	GAGTC	3 cut(s)	140, 262, 387
PshBI	ATTAAT	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	371, 610
PspFI	CCCAGC	2 cut(s)	263, 617
PspGI	CCWGG	2 cut(s)	371, 610
PspN4I	GGNNCC	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	2 cut(s)	23, 538
PvuI	CGATCG	1 cut(s)	459
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SapI	GCTCTTC	2 cut(s)	100, 408
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	4 cut(s)	15, 23, 456, 538
SchI	GAGTC	3 cut(s)	141, 262, 388
ScrFI	CCNGG	2 cut(s)	373, 612
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	6 cut(s)	14, 156, 221, 351, 393, 605
SfaNI	GCATC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	521
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	628
SspI	AATATT	1 cut(s)	422
SspMI	CTAG	1 cut(s)	624
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	371, 610
TaiI	ACGT	3 cut(s)	14, 156, 221
TaqI	TCGA	3 cut(s)	14, 433, 455
TasI	AATT	1 cut(s)	521
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	3 cut(s)	139, 430, 489
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	6 cut(s)	34, 55, 239, 267, 481, 566
Van91I	CCANNNNNTGG	1 cut(s)	617
VspI	ATTAAT	1 cut(s)	524
XspI	CTAG	1 cut(s)	624
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.