Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013481

Physical Location & Seq

Genomic Coordinates Forward (+)

40315306 .. 40317817

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G483600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGCGGAGCTGGCGATCCAAACCGGCGATTCTGGTGCTTTTCATACAGCTCTGCTTTTCGCTTATCTCTTCGTCGCTCGCAATTTCTCCCGGGTCTGCTGATGGGTACACCATCCATGGTCGAGTGAAGATCCACAGTATGGGGGCGAAAGGGTATGGCCTTTACCAAAAAACATCAAATGTCAAAGTCATACTAAATGCTGGTCAAAGTGTTACCTTTCTGAGGCCTGATGGATTTTTTTCATTCCATAATGTGCCTGCGGGGACTCATCTGATTGAAGTGACTGCAATAGGCTATTTCTTTTCTCCGGTCCGAGTTGATGTTAGTGCCAGAAACCCGGGCAAGGTTCAGGCAGCACTGACTGAAAATAGGAGGGGCCTAAATGAGTTTGTTTTAGAGCCATTGAGAGAGGAACAGTATTATGAGATAAGGGAACCCTTCTCCATAATGTCTCTTGTAAAGAGCCCAATGGGTCTGATGGTTGGATTTATGGTAGTTGTTGTGTTTCTGATGCCGAAGTTAGTGGAGAACATGGATCCTGAAGAAATGAGGCGGACACAAGAAGAAATGAGAAACCAAGGGGTTCCATCGCTAGCGAGCTTGTTACCTGGTGCTGCGAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2012

Protein Analysis

210

Amino Acids

23.18

Weight (kDa)

9.47

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25310 AT4G32130
fragaria_vesca	FvH4_2g28770
malus_domestica	MD08G1157200.v1.1 MD15G1128300.v1.1
prunus_persica	Prupe.1G483600_v2.0.a1
pyrus_communis	pycom15g11550
rosa_chinensis	RchiOBHm_Chr6g0297531
rosa_laevigata	RLG00000011586
rosa_multiflora	Rmu_sc0003740.1_g000001 Rmu_ssc0000319.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170390
rosa_rugosa	Rorug06G0273300
rosa_samantha	Rh6AG384300 Rh6BG392400 Rh6CG398300 Rh6DG384800
rosa_wichuraiana	Rw6G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	7, 263, 556
AclWI	GGATC	4 cut(s)	12, 127, 533, 546
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	142, 225, 346
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	3 cut(s)	12, 52, 603
AluI	AGCT	3 cut(s)	12, 52, 603
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	4 cut(s)	12, 127, 533, 546
Ama87I	CYCGRG	2 cut(s)	92, 340
AoxI	GGCC	3 cut(s)	160, 227, 379
ApeKI	GCWGC	2 cut(s)	356, 617
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	313, 379
AsuC2I	CCSGG	4 cut(s)	93, 94, 341, 342
AsuNHI	GCTAGC	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	92, 340
AvaII	GGWCC	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	368, 604
BccI	CCATC	5 cut(s)	98, 122, 227, 475, 598
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	612
BcnI	CCSGG	4 cut(s)	93, 94, 341, 342
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	596
BisI	GCNGC	2 cut(s)	357, 618
BlsI	GCNGC	2 cut(s)	358, 619
Bme1390I	CCNGG	5 cut(s)	93, 94, 341, 342, 612
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	2 cut(s)	92, 340
BmgT120I	GGNCC	2 cut(s)	313, 379
BmiI	GGNNCC	4 cut(s)	380, 438, 540, 588
BmrFI	CCNGG	5 cut(s)	93, 94, 341, 342, 612
BmsI	GCATC	1 cut(s)	504
BmtI	GCTAGC	1 cut(s)	599
BpuMI	CCSGG	4 cut(s)	93, 94, 341, 342
BsaJI	CCNNGG	4 cut(s)	92, 118, 340, 580
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 225, 346
Bse118I	RCCGGY	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	4 cut(s)	92, 118, 340, 580
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	142, 225, 346
BseMII	CTCAG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	368, 604
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	3 cut(s)	162, 229, 381
BsiHKCI	CYCGRG	2 cut(s)	92, 340
BsiSI	CCGG	4 cut(s)	26, 93, 311, 341
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	142, 225, 346
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	162, 229, 381
BsoBI	CYCGRG	2 cut(s)	92, 340
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	3 cut(s)	17, 132, 538
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	3 cut(s)	7, 263, 556
BspANI	GGCC	3 cut(s)	162, 229, 381
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	380, 438, 540, 588
BspOI	GCTAGC	1 cut(s)	599
BspPI	GGATC	4 cut(s)	12, 127, 533, 546
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	92, 118, 340, 580
BssMI	GATC	3 cut(s)	17, 132, 538
BssT1I	CCWWGG	2 cut(s)	118, 580
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	140, 420
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	5 cut(s)	14, 81, 261, 597, 601
BstDEI	CTNAG	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	118
BstENI	CCTNNNNNAGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	20, 135, 541
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	17, 132, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	5 cut(s)	91, 92, 339, 340, 610
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	368, 604
BstX2I	RGATCY	2 cut(s)	132, 538
BstYI	RGATCY	2 cut(s)	132, 538
BsuRI	GGCC	3 cut(s)	162, 229, 381
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	5 cut(s)	14, 81, 261, 597, 601
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	313, 379
Cfr9I	CCCGGG	2 cut(s)	92, 340
CpoI	CGGWCCG	1 cut(s)	313
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	109
CspI	CGGWCCG	1 cut(s)	313
CviAII	CATG	2 cut(s)	119, 535
CviJI	RGCY	9 cut(s)	12, 52, 162, 229, 297, 381, 403, 468, 603
CviKI_1	RGCY	9 cut(s)	12, 52, 162, 229, 297, 381, 403, 468, 603
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	19, 134, 540
DpnII	GATC	3 cut(s)	17, 132, 538
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	118, 580
Eco147I	AGGCCT	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	564
Eco88I	CYCGRG	2 cut(s)	92, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	118, 580
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	2 cut(s)	118, 580
FaeI	CATG	2 cut(s)	122, 538
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	118, 534
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	357, 618
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	357, 618
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	357, 618
HaeIII	GGCC	3 cut(s)	162, 229, 381
HapII	CCGG	4 cut(s)	26, 93, 311, 341
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	122, 538
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	31, 268
HpaII	CCGG	4 cut(s)	26, 93, 311, 341
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	5 cut(s)	225, 276, 317, 480, 513
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	2 cut(s)	140, 420
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	122, 538
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	17, 132, 538
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	2 cut(s)	368, 604
LweI	GCATC	1 cut(s)	504
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	1 cut(s)	596
MaeIII	GTNAC	3 cut(s)	214, 283, 606
MalI	GATC	3 cut(s)	19, 134, 540
MboI	GATC	3 cut(s)	17, 132, 538
MboII	GAAGA	4 cut(s)	63, 142, 557, 578
MflI	RGATCY	2 cut(s)	132, 538
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	5 cut(s)	219, 369, 406, 546, 615
MseI	TTAA	1 cut(s)	628
MspI	CCGG	4 cut(s)	26, 93, 311, 341
MspR9I	CCNGG	5 cut(s)	93, 94, 341, 342, 612
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	13
NciI	CCSGG	4 cut(s)	93, 94, 341, 342
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	17, 132, 538
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	2 cut(s)	122, 538
NlaIV	GGNNCC	4 cut(s)	380, 438, 540, 588
NmuCI	GTSAC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	358, 619
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	4 cut(s)	380, 438, 540, 588
PspPI	GGNCC	2 cut(s)	313, 379
PsuI	RGATCY	2 cut(s)	132, 538
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
Rsr2I	CGGWCCG	1 cut(s)	313
RsrII	CGGWCCG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	2 cut(s)	357, 618
Sau3AI	GATC	3 cut(s)	17, 132, 538
Sau96I	GGNCC	2 cut(s)	313, 379
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	5 cut(s)	93, 94, 341, 342, 612
SduI	GDGCHC	1 cut(s)	470
SetI	ASST	6 cut(s)	14, 54, 221, 351, 605, 613
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	504
SinI	GGWCC	1 cut(s)	313
SmaI	CCCGGG	2 cut(s)	94, 342
Sse9I	AATT	1 cut(s)	84
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	7, 263, 556
SspMI	CTAG	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	5 cut(s)	91, 92, 339, 340, 610
StyI	CCWWGG	2 cut(s)	118, 580
TaaI	ACNGT	2 cut(s)	140, 420
TaqI	TCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	356, 617
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	34, 234
TspMI	CCCGGG	2 cut(s)	92, 340
TspRI	CASTG	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	223
XmaI	CCCGGG	2 cut(s)	92, 340
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.