Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003740.1

Orthogroup ID

OG0013481

Physical Location & Seq

Genomic Coordinates Forward (+)

1501 .. 4274

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003740.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgattaatgatcatcagaccaagtcaaagattagtggcatttttgagtttgggagttggtctcctgatggttacaccattcatggccgagtgaagatcccgagtctgggggtgaaagggtttggtcttcatggaaaaatatctaatatcaaagtcatactaaatggtggccaaagtgttacctatctgaggcccgacgggtttttctcattccataatgtacctgcagggactcatctaattgaagtgtctgcaataggttatttcttttctccggtccgagttgatgttagtgccagaaaccctggcaaggttcaggcagcactgactgagaataggaggggtctacttgaatttgttttagagccacttagggaggaacaatattatgagataagggaacccttctccataatgtctgtcgtaaagagcccgatgggtttgatggttggatttatggtgattgttgtgtttgtgatgcccaaactagtggagaacatggatcctgaagaaatgaggcgaacccaagaagcaatgggaaatggagggctggcaagcatgttaccgggtgctgctgcgaggaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2012

Protein Analysis

195

Amino Acids

21.5

Weight (kDa)

8.89

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25310 AT4G32130
fragaria_vesca	FvH4_2g28770
malus_domestica	MD08G1157200.v1.1 MD15G1128300.v1.1
prunus_persica	Prupe.1G483600_v2.0.a1
pyrus_communis	pycom15g11550
rosa_chinensis	RchiOBHm_Chr6g0297531
rosa_laevigata	RLG00000011586
rosa_multiflora	Rmu_sc0003740.1_g000001 Rmu_ssc0000319.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170390
rosa_rugosa	Rorug06G0273300
rosa_samantha	Rh6AG384300 Rh6BG392400 Rh6CG398300 Rh6DG384800
rosa_wichuraiana	Rw6G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	346
AclWI	GGATC	3 cut(s)	91, 497, 510
AcoI	YGGCCR	2 cut(s)	85, 169
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	4 cut(s)	106, 107, 189, 310
AgsI	TTSAA	2 cut(s)	245, 353
AhlI	ACTAGT	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	91, 497, 510
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	3 cut(s)	85, 169, 191
ApeKI	GCWGC	3 cut(s)	320, 572, 575
ApoI	RAATTY	1 cut(s)	353
AseI	ATTAAT	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	192, 277
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	124, 472
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	332, 559, 562
BccI	CCATC	3 cut(s)	62, 430, 439
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	3 cut(s)	321, 573, 576
BlsI	GCNGC	3 cut(s)	322, 574, 577
Bme1390I	CCNGG	2 cut(s)	306, 567
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	192, 277
BmiI	GGNNCC	2 cut(s)	402, 504
BmrFI	CCNGG	2 cut(s)	306, 567
BmsI	GCATC	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	119
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpuMI	CCSGG	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 107, 189, 310
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	4 cut(s)	106, 107, 189, 310
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	2 cut(s)	179, 321
BseXI	GCAGC	3 cut(s)	332, 559, 562
BshFI	GGCC	3 cut(s)	87, 171, 193
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	275, 566
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	4 cut(s)	106, 107, 189, 310
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	87, 171, 193
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	10, 96, 502
BspANI	GGCC	3 cut(s)	87, 171, 193
BspCNI	CTCAG	2 cut(s)	180, 322
BspLI	GGNNCC	2 cut(s)	402, 504
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	3 cut(s)	91, 497, 510
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	540
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	3 cut(s)	10, 96, 502
Bst2UI	CCWGG	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	552, 556
BstDEI	CTNAG	3 cut(s)	188, 330, 371
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstKTI	GATC	3 cut(s)	13, 99, 505
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	10, 96, 502
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	304, 565
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	332, 559, 562
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	96, 502
BstXI	CCANNNNNNTGG	1 cut(s)	490
BstYI	RGATCY	2 cut(s)	96, 502
BsuRI	GGCC	3 cut(s)	87, 171, 193
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	552, 556
Cfr13I	GGNCC	2 cut(s)	192, 277
CpoI	CGGWCCG	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	221
CspI	CGGWCCG	1 cut(s)	277
CviAII	CATG	4 cut(s)	83, 131, 499, 559
CviJI	RGCY	6 cut(s)	87, 171, 193, 367, 432, 550
CviKI_1	RGCY	6 cut(s)	87, 171, 193, 367, 432, 550
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	188, 330, 371
DpnI	GATC	3 cut(s)	12, 98, 504
DpnII	GATC	3 cut(s)	10, 96, 502
EaeI	YGGCCR	2 cut(s)	85, 169
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	434
FaeI	CATG	4 cut(s)	86, 134, 502, 562
FaiI	YATR	9 cut(s)	84, 132, 158, 216, 390, 413, 458, 500, 560
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	4 cut(s)	82, 130, 498, 558
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	321, 573, 576
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	3 cut(s)	321, 573, 576
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	3 cut(s)	321, 573, 576
HaeIII	GGCC	3 cut(s)	87, 171, 193
HapII	CCGG	2 cut(s)	275, 566
Hin1II	CATG	4 cut(s)	86, 134, 502, 562
HinfI	GANTC	2 cut(s)	103, 232
HpaII	CCGG	2 cut(s)	275, 566
HphI	GGTGA	2 cut(s)	124, 472
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	18, 189, 281
Hpy188III	TCNNGA	3 cut(s)	65, 100, 506
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	227, 254
HpyF3I	CTNAG	3 cut(s)	188, 330, 371
Hsp92II	CATG	4 cut(s)	86, 134, 502, 562
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 96, 502
Lsp1109I	GCAGC	3 cut(s)	332, 559, 562
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	3 cut(s)	71, 178, 561
MalI	GATC	3 cut(s)	12, 98, 504
MboI	GATC	3 cut(s)	10, 96, 502
MboII	GAAGA	3 cut(s)	106, 119, 521
MflI	RGATCY	2 cut(s)	96, 502
MhlI	GDGCHC	1 cut(s)	434
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	3 cut(s)	240, 353, 583
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	112, 226
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	6 cut(s)	183, 333, 370, 510, 539, 573
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	2 cut(s)	6, 586
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	2 cut(s)	275, 566
MspR9I	CCNGG	2 cut(s)	306, 567
MvaI	CCWGG	1 cut(s)	306
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	3 cut(s)	10, 96, 502
NlaIII	CATG	4 cut(s)	86, 134, 502, 562
NlaIV	GGNNCC	2 cut(s)	402, 504
NmeAIII	GCCGAG	1 cut(s)	113
NspI	RCATGY	1 cut(s)	562
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	322, 574, 577
PleI	GAGTC	2 cut(s)	111, 226
PpsI	GAGTC	2 cut(s)	111, 226
PshBI	ATTAAT	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	402, 504
PspPI	GGNCC	2 cut(s)	192, 277
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	96, 502
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
Rsr2I	CGGWCCG	1 cut(s)	277
RsrII	CGGWCCG	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	6, 586
SatI	GCNGC	3 cut(s)	321, 573, 576
Sau3AI	GATC	3 cut(s)	10, 96, 502
Sau96I	GGNCC	2 cut(s)	192, 277
SbfI	CCTGCAGG	1 cut(s)	229
SchI	GAGTC	2 cut(s)	112, 226
ScrFI	CCNGG	2 cut(s)	306, 567
SdaI	CCTGCAGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	4 cut(s)	185, 226, 262, 315
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	277
SpeI	ACTAGT	1 cut(s)	487
Sse8387I	CCTGCAGG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	240, 353, 583
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	304, 565
TasI	AATT	3 cut(s)	240, 353, 583
Tru1I	TTAA	2 cut(s)	6, 586
Tru9I	TTAA	2 cut(s)	6, 586
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	3 cut(s)	320, 572, 575
TspDTI	ATGAA	2 cut(s)	71, 119
TspRI	CASTG	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	6
XagI	CCTNNNNNAGG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.