Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013481

Physical Location & Seq

Genomic Coordinates Forward (+)

17502737 .. 17505422

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1157200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACCTCAATATGTGAGAGAAGAGAAGAAAAAGGAAGGAGGGATCCTACTCCATTCCGTAGAAGTACTCACCGCACCATTCGGATTAGAGTCAGAATAAACAAGTGCGGACCTGATTTCGCCGGCTACAAGAAAAACACAGCAAGCTGCGTAACACCAGATCCTCAAAACTCTATCTCTATCTCTGAAACTCTCGCAAAACCTGTCTGTTTGGTTATGGCGCGGAGCTGGAGATCCAATCCGGTGGTTCTCGTGCTTTTCCTACAGCTCTGCTTGTCGCTCATCTCTTCGTCGCTCGCAGTTTCTCCCGGGTCTGCCGACGGATACACCATTCATGGCAGAGTGAAGATCCCACCCAGTCTCGGGGTGAAGGGGTTTGCACCTTACGGAAAAATATCAAATATCAAAGTCATACTAAATGGTGGTCAAAGTGTTACCTTTCTGAGGCCTGATGGATTTTTTACATTCCATAATGTGCCTGCGGGGACTCATTTGATCGAAGTGTCTGCGATAGGCTATTTCTTTTCTCCGGTCCGAGTTGATGTTAGTGCTAGAAACCCTGGCAAGGTTCAGGCAGCACTGACTGAGAATAGGAGGCCTCTAAATGAGTTTGTTTTGGAGCCATTGAGAGAGGAACAGTATTATGAGATAAGAGAACCCTTCTCCATAATGTCTCTTGTAAAGAGCCCCATGGGTCTGATGGTTGGATTTATGCTAATTGTCGTGTTCCTGATGCCAAAGTTAGTGGAGAACATGGATCCTGAAGAAATGAGGCGAACACAAGAAGAAATGAGAAACCAAGGCGTTCCATCACTGACAAGTTTGTTACCTGGTGCTGCGAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2012

Protein Analysis

283

Amino Acids

31.4

Weight (kDa)

9.76

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC7_beta-sandw	PF09430	131 - 234	1.1e-22	ER membrane protein complex subunit 7, beta-sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25310 AT4G32130
fragaria_vesca	FvH4_2g28770
malus_domestica	MD08G1157200.v1.1 MD15G1128300.v1.1
prunus_persica	Prupe.1G483600_v2.0.a1
pyrus_communis	pycom15g11550
rosa_chinensis	RchiOBHm_Chr6g0297531
rosa_laevigata	RLG00000011586
rosa_multiflora	Rmu_sc0003740.1_g000001 Rmu_ssc0000319.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170390
rosa_rugosa	Rorug06G0273300
rosa_samantha	Rh6AG384300 Rh6BG392400 Rh6CG398300 Rh6DG384800
rosa_wichuraiana	Rw6G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	223
AciI	CCGC	4 cut(s)	73, 108, 223, 482
AclWI	GGATC	7 cut(s)	38, 51, 155, 228, 343, 752, 765
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	4 cut(s)	362, 363, 444, 565
AjnI	CCWGG	2 cut(s)	559, 829
AluBI	AGCT	3 cut(s)	147, 228, 268
AluI	AGCT	3 cut(s)	147, 228, 268
Alw26I	GTCTC	2 cut(s)	365, 678
AlwI	GGATC	7 cut(s)	38, 51, 155, 228, 343, 752, 765
Ama87I	CYCGRG	2 cut(s)	308, 362
AoxI	GGCC	2 cut(s)	446, 596
ApeKI	GCWGC	3 cut(s)	147, 575, 836
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	110, 532
AsuC2I	CCSGG	2 cut(s)	309, 310
AsuHPI	GGTGA	2 cut(s)	62, 379
AvaI	CYCGRG	2 cut(s)	308, 362
AvaII	GGWCC	2 cut(s)	110, 532
BamHI	GGATCC	2 cut(s)	43, 757
BanII	GRGCYC	1 cut(s)	689
BauI	CACGAG	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	134, 587, 823
BccI	CCATC	3 cut(s)	446, 694, 817
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	2 cut(s)	561, 831
BciVI	GTATCC	1 cut(s)	317
BcnI	CCSGG	2 cut(s)	309, 310
BcoDI	GTCTC	2 cut(s)	365, 678
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	148, 576, 837
BlsI	GCNGC	3 cut(s)	149, 577, 838
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	4 cut(s)	309, 310, 561, 831
Bme18I	GGWCC	2 cut(s)	110, 532
BmeT110I	CYCGRG	2 cut(s)	308, 362
BmgT120I	GGNCC	2 cut(s)	110, 532
BmiI	GGNNCC	3 cut(s)	45, 621, 759
BmrFI	CCNGG	4 cut(s)	309, 310, 561, 831
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	723
BmuI	ACTGGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	250
BpuMI	CCSGG	2 cut(s)	309, 310
BsaJI	CCNNGG	4 cut(s)	308, 559, 690, 799
BsaWI	WCCGGW	2 cut(s)	241, 529
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 363, 444, 565
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	561, 831
BseDI	CCNNGG	4 cut(s)	308, 559, 690, 799
BseLI	CCNNNNNNNGG	4 cut(s)	362, 363, 444, 565
BseMII	CTCAG	2 cut(s)	434, 576
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	134, 587, 823
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	448, 598
BsiHKCI	CYCGRG	2 cut(s)	308, 362
BsiSI	CCGG	4 cut(s)	123, 242, 309, 530
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	4 cut(s)	362, 363, 444, 565
BsmAI	GTCTC	2 cut(s)	365, 678
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	448, 598
BsoBI	CYCGRG	2 cut(s)	308, 362
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	4 cut(s)	73, 108, 223, 482
BspANI	GGCC	2 cut(s)	448, 598
BspCNI	CTCAG	2 cut(s)	435, 577
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	45, 621, 759
BspPI	GGATC	7 cut(s)	38, 51, 155, 228, 343, 752, 765
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	4 cut(s)	308, 559, 690, 799
BssMI	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	2 cut(s)	690, 799
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	561, 831
Bst4CI	ACNGT	1 cut(s)	639
Bst6I	CTCTTC	2 cut(s)	16, 292
BstC8I	GCNNGC	4 cut(s)	124, 145, 297, 480
BstDEI	CTNAG	2 cut(s)	443, 585
BstDSI	CCRYGG	1 cut(s)	690
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	6 cut(s)	46, 163, 236, 351, 498, 760
BstMAI	GTCTC	2 cut(s)	365, 678
BstMBI	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
BstNI	CCWGG	2 cut(s)	561, 831
BstSCI	CCNGG	4 cut(s)	307, 308, 559, 829
BstSFI	CTRYAG	1 cut(s)	263
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	134, 587, 823
BstX2I	RGATCY	5 cut(s)	43, 160, 233, 348, 757
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	5 cut(s)	43, 160, 233, 348, 757
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	448, 598
BtgI	CCRYGG	1 cut(s)	690
BtsIMutI	CAGTG	2 cut(s)	578, 812
Cac8I	GCNNGC	4 cut(s)	124, 145, 297, 480
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	110, 532
Cfr9I	CCCGGG	1 cut(s)	308
CpoI	CGGWCCG	1 cut(s)	532
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	1 cut(s)	66
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CspI	CGGWCCG	1 cut(s)	532
CviAII	CATG	3 cut(s)	335, 691, 754
CviJI	RGCY	9 cut(s)	126, 147, 228, 268, 448, 516, 598, 622, 687
CviKI_1	RGCY	9 cut(s)	126, 147, 228, 268, 448, 516, 598, 622, 687
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	443, 585
DpnI	GATC	6 cut(s)	45, 162, 235, 350, 497, 759
DpnII	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
Eam1104I	CTCTTC	2 cut(s)	16, 292
EarI	CTCTTC	2 cut(s)	16, 292
Eco130I	CCWWGG	2 cut(s)	690, 799
Eco147I	AGGCCT	2 cut(s)	448, 598
Eco24I	GRGCYC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	110, 532
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	2 cut(s)	308, 362
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	559, 829
EcoT14I	CCWWGG	2 cut(s)	690, 799
EcoT38I	GRGCYC	1 cut(s)	689
ErhI	CCWWGG	2 cut(s)	690, 799
FaeI	CATG	3 cut(s)	338, 694, 757
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	3 cut(s)	334, 690, 753
FauI	CCCGC	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	148, 576, 837
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	3 cut(s)	148, 576, 837
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	148, 576, 837
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	448, 598
HapII	CCGG	4 cut(s)	123, 242, 309, 530
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	3 cut(s)	338, 694, 757
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	2 cut(s)	90, 487
HpaII	CCGG	4 cut(s)	123, 242, 309, 530
HphI	GGTGA	2 cut(s)	62, 379
Hpy188I	TCNGA	6 cut(s)	84, 95, 187, 444, 536, 699
Hpy188III	TCNNGA	2 cut(s)	730, 761
Hpy99I	CGWCG	2 cut(s)	295, 323
HpyAV	CCTTC	3 cut(s)	30, 364, 670
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4V	TGCA	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	443, 585
Hsp92II	CATG	3 cut(s)	338, 694, 757
HspAI	GCGC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
LmnI	GCTCC	2 cut(s)	225, 619
Lsp1109I	GCAGC	3 cut(s)	134, 587, 823
LweI	GCATC	1 cut(s)	723
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	3 cut(s)	151, 433, 825
MalI	GATC	6 cut(s)	45, 162, 235, 350, 497, 759
MboI	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
MboII	GAAGA	6 cut(s)	33, 38, 279, 358, 776, 797
MflI	RGATCY	5 cut(s)	43, 160, 233, 348, 757
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	1 cut(s)	717
MlyI	GAGTC	2 cut(s)	99, 481
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	9 cut(s)	16, 33, 174, 438, 588, 609, 625, 765, 834
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	1 cut(s)	847
MspI	CCGG	4 cut(s)	123, 242, 309, 530
MspR9I	CCNGG	4 cut(s)	309, 310, 561, 831
MvaI	CCWGG	2 cut(s)	561, 831
MvnI	CGCG	1 cut(s)	223
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	309, 310
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	338, 694, 757
NlaIV	GGNNCC	3 cut(s)	45, 621, 759
PceI	AGGCCT	2 cut(s)	448, 598
PdiI	GCCGGC	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	149, 577, 838
PleI	GAGTC	2 cut(s)	98, 481
PpsI	GAGTC	2 cut(s)	98, 481
Psp6I	CCWGG	2 cut(s)	559, 829
PspGI	CCWGG	2 cut(s)	559, 829
PspN4I	GGNNCC	3 cut(s)	45, 621, 759
PspPI	GGNCC	2 cut(s)	110, 532
PsuI	RGATCY	5 cut(s)	43, 160, 233, 348, 757
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
Rsr2I	CGGWCCG	1 cut(s)	532
RsrII	CGGWCCG	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	847
SatI	GCNGC	3 cut(s)	148, 576, 837
Sau3AI	GATC	6 cut(s)	43, 160, 233, 348, 495, 757
Sau96I	GGNCC	2 cut(s)	110, 532
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	2 cut(s)	99, 481
ScrFI	CCNGG	4 cut(s)	309, 310, 561, 831
SduI	GDGCHC	1 cut(s)	689
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	1 cut(s)	723
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	110, 532
SmaI	CCCGGG	1 cut(s)	310
Sse9I	AATT	1 cut(s)	717
SseBI	AGGCCT	2 cut(s)	448, 598
SsiI	CCGC	4 cut(s)	73, 108, 223, 482
SspMI	CTAG	1 cut(s)	552
StuI	AGGCCT	2 cut(s)	448, 598
StyD4I	CCNGG	4 cut(s)	307, 308, 559, 829
StyI	CCWWGG	2 cut(s)	690, 799
TaaI	ACNGT	1 cut(s)	639
TaqI	TCGA	1 cut(s)	498
TasI	AATT	1 cut(s)	717
TatI	WGTACW	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	847
Tru9I	TTAA	1 cut(s)	847
TscAI	CASTG	2 cut(s)	585, 819
TseI	GCWGC	3 cut(s)	147, 575, 836
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	3 cut(s)	47, 336, 402
TspMI	CCCGGG	1 cut(s)	308
TspRI	CASTG	2 cut(s)	585, 819
VpaK11BI	GGWCC	2 cut(s)	110, 532
XagI	CCTNNNNNAGG	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmaI	CCCGGG	1 cut(s)	308
XspI	CTAG	1 cut(s)	552
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.