Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013481

Physical Location & Seq

Genomic Coordinates Reverse (-)

22465664 .. 22468618

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGGTGGAGCTGCCGATCCAAACCCGTCCTTTTCTTGCTTCTCCTTCCGTTTTGCTTCATCATCATCTCTCCCTCGCTAGTATCTGCGGGGTCGGCTGCTGATGGCTACCTTATTAGTGGCCAAGTCAAGATCCCAAGTCTAGGGGTGAAAGGGTTTGGTCTTCATGGAAAAATATCAAACATCAAAGTCATACTAAATGGTGGCCAAAGAGTTACCTATCTGAGGCCTGACGGGGTTTTCTCATTCCATAATGTACCTGCGGGGACTCATCTAATTGAAGTGTCTGCAATAGGTTATTTCTTTTCTCCGGTCCGAGTTGATGTTAGTGCTAGAAACCCAGGCAAGGTTCAGGCAGCACTGACTGAGAATAGGAGGGGTCTCCTTACATTTGTTTTAGAGCCACTTAGAGAGGAACAATATTATGAGATAAGGGAACCCTTCAACATTATGTCTATTGTAAAGAGTCCAATGGGTTTGATGGTTGGATTTATGGTGGTGGTTGTGTTTTTGATGCCCAAACTAATGGAGAACATGGATCCCGAAGAAATGAGGCGAACTCAAGAAGCAATGGGAAACGGAGGACTAGCAAGCATGTTACCTGGTGCTGCTGCGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2012

Protein Analysis

208

Amino Acids

22.62

Weight (kDa)

9.39

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC7_beta-sandw	PF09430	59 - 161	1.2e-21	ER membrane protein complex subunit 7, beta-sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25310 AT4G32130
fragaria_vesca	FvH4_2g28770
malus_domestica	MD08G1157200.v1.1 MD15G1128300.v1.1
prunus_persica	Prupe.1G483600_v2.0.a1
pyrus_communis	pycom15g11550
rosa_chinensis	RchiOBHm_Chr6g0297531
rosa_laevigata	RLG00000011586
rosa_multiflora	Rmu_sc0003740.1_g000001 Rmu_ssc0000319.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170390
rosa_rugosa	Rorug06G0273300
rosa_samantha	Rh6AG384300 Rh6BG392400 Rh6CG398300 Rh6DG384800
rosa_wichuraiana	Rw6G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AciI	CCGC	2 cut(s)	89, 263
AclWI	GGATC	4 cut(s)	12, 127, 533, 546
AcoI	YGGCCR	2 cut(s)	121, 205
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	143, 225, 346
AgsI	TTSAA	2 cut(s)	281, 445
AjnI	CCWGG	2 cut(s)	340, 601
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	4 cut(s)	12, 127, 533, 546
AoxI	GGCC	3 cut(s)	121, 205, 227
ApeKI	GCWGC	5 cut(s)	12, 98, 356, 608, 611
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	2 cut(s)	123, 207
BamHI	GGATCC	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	85, 368, 595, 598
BccI	CCATC	2 cut(s)	98, 475
BciT130I	CCWGG	2 cut(s)	342, 603
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	4 cut(s)	80, 143, 333, 587
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	5 cut(s)	13, 99, 357, 609, 612
BlsI	GCNGC	5 cut(s)	14, 100, 358, 610, 613
Bme1390I	CCNGG	2 cut(s)	342, 603
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	438, 540
BmrFI	CCNGG	2 cut(s)	342, 603
BmsI	GCATC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpuEI	CTTGAG	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 225, 346
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	342, 603
BseDI	CCNNGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	143, 225, 346
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	215, 357
BseXI	GCAGC	4 cut(s)	85, 368, 595, 598
BshFI	GGCC	3 cut(s)	123, 207, 229
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	143, 225, 346
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	123, 207, 229
Bso31I	GGTCTC	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	17, 132, 538
BspACI	CCGC	2 cut(s)	89, 263
BspANI	GGCC	3 cut(s)	123, 207, 229
BspCNI	CTCAG	2 cut(s)	216, 358
BspLI	GGNNCC	2 cut(s)	438, 540
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	4 cut(s)	12, 127, 533, 546
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	17, 132, 538
Bst2UI	CCWGG	2 cut(s)	342, 603
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	3 cut(s)	224, 366, 407
BstENI	CCTNNNNNAGG	1 cut(s)	223
BstKTI	GATC	3 cut(s)	20, 135, 541
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	3 cut(s)	17, 132, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	2 cut(s)	342, 603
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	340, 601
BstV1I	GCAGC	4 cut(s)	85, 368, 595, 598
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	132, 538
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	2 cut(s)	132, 538
BsuRI	GGCC	3 cut(s)	123, 207, 229
BtsIMutI	CAGTG	1 cut(s)	359
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	313
CpoI	CGGWCCG	1 cut(s)	313
CsiI	ACCWGGT	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	257
CspI	CGGWCCG	1 cut(s)	313
CviAII	CATG	3 cut(s)	167, 535, 595
CviJI	RGCY	7 cut(s)	12, 98, 108, 123, 207, 229, 403
CviKI_1	RGCY	7 cut(s)	12, 98, 108, 123, 207, 229, 403
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	224, 366, 407
DpnI	GATC	3 cut(s)	19, 134, 540
DpnII	GATC	3 cut(s)	17, 132, 538
EaeI	YGGCCR	2 cut(s)	121, 205
Eco147I	AGGCCT	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	340, 601
FaeI	CATG	3 cut(s)	170, 538, 598
FaiI	YATR	8 cut(s)	168, 194, 252, 426, 452, 494, 536, 596
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	3 cut(s)	166, 534, 594
FauI	CCCGC	2 cut(s)	82, 256
Fnu4HI	GCNGC	5 cut(s)	13, 99, 357, 609, 612
Fsp4HI	GCNGC	5 cut(s)	13, 99, 357, 609, 612
FspBI	CTAG	4 cut(s)	80, 143, 333, 587
GluI	GCNGC	5 cut(s)	13, 99, 357, 609, 612
HaeIII	GGCC	3 cut(s)	123, 207, 229
HapII	CCGG	1 cut(s)	311
Hin1II	CATG	3 cut(s)	170, 538, 598
HinfI	GANTC	2 cut(s)	268, 466
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	225, 317
Hpy188III	TCNNGA	3 cut(s)	130, 542, 563
HpyAV	CCTTC	2 cut(s)	56, 451
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	224, 366, 407
Hsp92II	CATG	3 cut(s)	170, 538, 598
Kzo9I	GATC	3 cut(s)	17, 132, 538
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	8 cut(s)	243, 273, 324, 327, 338, 354, 588, 615
Lsp1109I	GCAGC	4 cut(s)	85, 368, 595, 598
LweI	GCATC	1 cut(s)	504
MabI	ACCWGGT	1 cut(s)	601
MaeI	CTAG	4 cut(s)	80, 143, 333, 587
MaeIII	GTNAC	2 cut(s)	214, 597
MalI	GATC	3 cut(s)	19, 134, 540
MboI	GATC	3 cut(s)	17, 132, 538
MboII	GAAGA	2 cut(s)	155, 557
MflI	RGATCY	2 cut(s)	132, 538
MlsI	TGGCCA	2 cut(s)	123, 207
MluCI	AATT	2 cut(s)	276, 619
MluNI	TGGCCA	2 cut(s)	123, 207
MlyI	GAGTC	2 cut(s)	262, 475
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	7 cut(s)	85, 219, 369, 406, 546, 575, 609
Mox20I	TGGCCA	2 cut(s)	123, 207
MscI	TGGCCA	2 cut(s)	123, 207
MseI	TTAA	1 cut(s)	622
Msp20I	TGGCCA	2 cut(s)	123, 207
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	342, 603
MvaI	CCWGG	2 cut(s)	342, 603
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	3 cut(s)	17, 132, 538
NlaIII	CATG	3 cut(s)	170, 538, 598
NlaIV	GGNNCC	2 cut(s)	438, 540
NspI	RCATGY	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	14, 100, 358, 610, 613
PleI	GAGTC	2 cut(s)	262, 474
PpsI	GAGTC	2 cut(s)	262, 474
Psp6I	CCWGG	2 cut(s)	340, 601
PspGI	CCWGG	2 cut(s)	340, 601
PspN4I	GGNNCC	2 cut(s)	438, 540
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	132, 538
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
Rsr2I	CGGWCCG	1 cut(s)	313
RsrII	CGGWCCG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	622
SatI	GCNGC	5 cut(s)	13, 99, 357, 609, 612
Sau3AI	GATC	3 cut(s)	17, 132, 538
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	262, 475
ScrFI	CCNGG	2 cut(s)	342, 603
SetI	ASST	7 cut(s)	14, 114, 221, 262, 298, 351, 604
SexAI	ACCWGGT	1 cut(s)	601
SfaNI	GCATC	1 cut(s)	504
SinI	GGWCC	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	2 cut(s)	276, 619
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	2 cut(s)	89, 263
SspI	AATATT	1 cut(s)	422
SspMI	CTAG	4 cut(s)	80, 143, 333, 587
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	340, 601
TasI	AATT	2 cut(s)	276, 619
Tru1I	TTAA	1 cut(s)	622
Tru9I	TTAA	1 cut(s)	622
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	5 cut(s)	12, 98, 356, 608, 611
TspDTI	ATGAA	2 cut(s)	49, 155
TspGWI	ACGGA	2 cut(s)	39, 594
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	223
XceI	RCATGY	1 cut(s)	598
XspI	CTAG	4 cut(s)	80, 143, 333, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.