Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013481

Physical Location & Seq

Genomic Coordinates Forward (+)

9291988 .. 9294534

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1128300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGCGGAGCTGGAGATCCAATCCGGTGGTTCTCGTGCTTTTCCTACAGTTGTGCTTTTCGCTCATCTCTTCGTCACTCGCAATTTCTCCCGACTCTGCCGACGGATACACCATTCATGGCCGAGTAAAGATCCCACCCAGTCTCGGGGTGAAAGGGTTTGCACCTTATGGAAAGATATCAAATATCAAAGTCATACTAAATGGTGGTCAAAATGTTACCTTTCTGAGGCCTGATGGATTTTTTTCATTCCATAATGTGCCTGCGGGGACTCATTTGATCGAAGTGTCTGCGATAGGCTATTTCTTTTCTCCGGTCCGAGTTGATGTTAGTGCTAGAAACCCAGGCAAGGTTCAGGCAGCACTGACTGAGAATAGGAGGCCACTGAATGAGTTTGTTTTGGAGCCATTGAGAGAGGAACAGTATTACGAGATAAGAGAACCCTTCTCCATAATGGCTCTTGTAAAGAGCCCCATGGGACTGATGGTTGGATTTATGCTAATTGTCGTGTTTCTTATGCCGAAATTAGTGGAGAACATGGATCCCGAAGAAATGAGGCGAACACAAGAAGAAATGAGAAACCAAGGGGTTCCATCGCTGGCAAGTTTGTTACCTGGTGCCGCGAGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2012

Protein Analysis

211

Amino Acids

23.3

Weight (kDa)

9.13

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC7_beta-sandw	PF09430	59 - 162	1.2e-22	ER membrane protein complex subunit 7, beta-sandwich domain
CarbopepD_reg_2	PF13715	60 - 133	6.4e-06	CarboxypepD_reg-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25310 AT4G32130
fragaria_vesca	FvH4_2g28770
malus_domestica	MD08G1157200.v1.1 MD15G1128300.v1.1
prunus_persica	Prupe.1G483600_v2.0.a1
pyrus_communis	pycom15g11550
rosa_chinensis	RchiOBHm_Chr6g0297531
rosa_laevigata	RLG00000011586
rosa_multiflora	Rmu_sc0003740.1_g000001 Rmu_ssc0000319.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170390
rosa_rugosa	Rorug06G0273300
rosa_samantha	Rh6AG384300 Rh6BG392400 Rh6CG398300 Rh6DG384800
rosa_wichuraiana	Rw6G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	617
AccII	CGCG	2 cut(s)	7, 623
AciI	CCGC	3 cut(s)	7, 266, 621
AclWI	GGATC	4 cut(s)	12, 127, 536, 549
AcoI	YGGCCR	1 cut(s)	121
AfiI	CCNNNNNNNGG	4 cut(s)	146, 147, 228, 349
AjnI	CCWGG	2 cut(s)	343, 613
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	4 cut(s)	12, 127, 536, 549
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	121, 230, 380
ApeKI	GCWGC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	316
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	473
BauI	CACGAG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	3 cut(s)	230, 478, 601
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	2 cut(s)	345, 615
BciVI	GTATCC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	360, 621
BlsI	GCNGC	2 cut(s)	361, 622
Bme1390I	CCNGG	2 cut(s)	345, 615
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	4 cut(s)	405, 543, 591, 619
BmrFI	CCNGG	2 cut(s)	345, 615
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	343, 474, 583
BsaWI	WCCGGW	2 cut(s)	25, 313
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 147, 228, 349
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	345, 615
BseDI	CCNNGG	3 cut(s)	343, 474, 583
BseLI	CCNNNNNNNGG	4 cut(s)	146, 147, 228, 349
BseMII	CTCAG	2 cut(s)	218, 360
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	371
Bsh1236I	CGCG	2 cut(s)	7, 623
BshFI	GGCC	3 cut(s)	123, 232, 382
BshNI	GGYRCC	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	26, 314
BslFI	GGGAC	2 cut(s)	283, 492
BslI	CCNNNNNNNGG	4 cut(s)	146, 147, 228, 349
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	283, 492
BsnI	GGCC	3 cut(s)	123, 232, 382
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	17, 132, 279, 541
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	3 cut(s)	7, 266, 621
BspANI	GGCC	3 cut(s)	123, 232, 382
BspCNI	CTCAG	2 cut(s)	219, 361
BspFNI	CGCG	2 cut(s)	7, 623
BspLI	GGNNCC	4 cut(s)	405, 543, 591, 619
BspPI	GGATC	4 cut(s)	12, 127, 536, 549
BspT107I	GGYRCC	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	343, 474, 583
BssMI	GATC	4 cut(s)	17, 132, 279, 541
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	474, 583
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	345, 615
Bst4CI	ACNGT	2 cut(s)	51, 423
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	264, 600
BstDEI	CTNAG	2 cut(s)	227, 369
BstDSI	CCRYGG	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	226
BstFNI	CGCG	2 cut(s)	7, 623
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	20, 135, 282, 544
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	4 cut(s)	17, 132, 279, 541
BstNI	CCWGG	2 cut(s)	345, 615
BstSCI	CCNGG	2 cut(s)	343, 613
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	2 cut(s)	7, 623
BstV1I	GCAGC	1 cut(s)	371
BstX2I	RGATCY	3 cut(s)	17, 132, 541
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	3 cut(s)	17, 132, 541
BsuI	GTATCC	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	123, 232, 382
BtgI	CCRYGG	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	362, 383
Cac8I	GCNNGC	2 cut(s)	264, 600
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	316
CpoI	CGGWCCG	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	613
CspI	CGGWCCG	1 cut(s)	316
CviAII	CATG	3 cut(s)	119, 475, 538
CviJI	RGCY	8 cut(s)	12, 123, 232, 300, 382, 406, 458, 471
CviKI_1	RGCY	8 cut(s)	12, 123, 232, 300, 382, 406, 458, 471
DdeI	CTNAG	2 cut(s)	227, 369
DpnI	GATC	4 cut(s)	19, 134, 281, 543
DpnII	GATC	4 cut(s)	17, 132, 279, 541
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	474, 583
Eco147I	AGGCCT	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	343, 613
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	474, 583
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	2 cut(s)	474, 583
FaeI	CATG	3 cut(s)	122, 478, 541
FaiI	YATR	9 cut(s)	120, 171, 197, 255, 452, 476, 497, 518, 539
FaqI	GGGAC	2 cut(s)	283, 492
FatI	CATG	3 cut(s)	118, 474, 537
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	360, 621
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	360, 621
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	360, 621
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	123, 232, 382
HapII	CCGG	2 cut(s)	26, 314
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	122, 478, 541
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	95, 271
HpaII	CCGG	2 cut(s)	26, 314
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	228, 320
Hpy188III	TCNNGA	2 cut(s)	92, 545
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	2 cut(s)	51, 423
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	227, 369
Hsp92II	CATG	3 cut(s)	122, 478, 541
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	17, 132, 279, 541
LmnI	GCTCC	2 cut(s)	9, 403
Lsp1109I	GCAGC	1 cut(s)	371
MabI	ACCWGGT	1 cut(s)	613
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	75, 217, 609
MalI	GATC	4 cut(s)	19, 134, 281, 543
MboI	GATC	4 cut(s)	17, 132, 279, 541
MboII	GAAGA	3 cut(s)	63, 560, 581
MflI	RGATCY	3 cut(s)	17, 132, 541
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	84, 501, 524
MlyI	GAGTC	2 cut(s)	89, 265
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	5 cut(s)	222, 372, 409, 549, 618
MspI	CCGG	2 cut(s)	26, 314
MspR9I	CCNGG	2 cut(s)	345, 615
MvaI	CCWGG	2 cut(s)	345, 615
MvnI	CGCG	2 cut(s)	7, 623
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	4 cut(s)	17, 132, 279, 541
NlaIII	CATG	3 cut(s)	122, 478, 541
NlaIV	GGNNCC	4 cut(s)	405, 543, 591, 619
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	361, 622
PleI	GAGTC	2 cut(s)	89, 265
PpsI	GAGTC	2 cut(s)	89, 265
Psp6I	CCWGG	2 cut(s)	343, 613
PspGI	CCWGG	2 cut(s)	343, 613
PspN4I	GGNNCC	4 cut(s)	405, 543, 591, 619
PspPI	GGNCC	1 cut(s)	316
PsuI	RGATCY	3 cut(s)	17, 132, 541
Rsr2I	CGGWCCG	1 cut(s)	316
RsrII	CGGWCCG	1 cut(s)	316
SatI	GCNGC	2 cut(s)	360, 621
Sau3AI	GATC	4 cut(s)	17, 132, 279, 541
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	89, 265
ScrFI	CCNGG	2 cut(s)	345, 615
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	5 cut(s)	14, 169, 224, 354, 616
SexAI	ACCWGGT	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	316
Sse9I	AATT	3 cut(s)	84, 501, 524
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	3 cut(s)	7, 266, 621
SspMI	CTAG	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	343, 613
StyI	CCWWGG	2 cut(s)	474, 583
TaaI	ACNGT	2 cut(s)	51, 423
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	84, 501, 524
TauI	GCSGC	1 cut(s)	623
TscAI	CASTG	2 cut(s)	369, 390
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	107, 237
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	369, 390
VpaK11BI	GGWCC	1 cut(s)	316
XagI	CCTNNNNNAGG	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.