AT2G25625

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012471
Physical Location & Seq
Forward (+)
10906215 .. 10907350
1136 bp
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UTR
Exon/CDS
Intron
AT2G25625.1

Sequence Viewer

Length: 459 bp
ATGGCAGGGAGAATAAGCTGCTGTCTAAATCTTCCTCCCCTAGATTCAAATTCTGCACAATCATTAGCTTCACTGCTCAAGACAACGTCAAAGATCTCTTGTAGGAGAACAGAAAATGAGACAGAGCCACGGAAAAACAAGTGTTCTTTTGTCTTGGGGGTGGCGGCAACTGTCGTAATCGGCGGGATTCAGATCAATGATGTTGCATCAGTGGAAGCTGCGGTTGTGAAATCGCCGGTAGAAGAGATGGCTGCGGGTGTGGTGCCGCCGCGGAGGTGGAGTGACAAGAGGACGTGTCCGCCTTGGCTTGAGAACTCGCTAGAGACCATCGTACCGGAGAATCTTCCTCGTCCGTCTGCTCATCGACGTTTGGAGTTAGCCGGATTAGCTAAGGGTGATGCACCGCCGGTCGGTGTGGTGATGACACGTGTCAACAGGGGTGGTTGTTTCTCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.22

Weight (kDa)

9.07

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 1 cut(s) 271
AciI CCGC 9 cut(s) 164, 183, 221, 254, 266, 269, 271, 299, 404
AcsI RAATTY 1 cut(s) 49
AcvI CACGTG 1 cut(s) 428
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 3 cut(s) 293, 425, 427
AgsI TTSAA 1 cut(s) 48
AjiI CACGTC 1 cut(s) 294
AluBI AGCT 4 cut(s) 18, 68, 218, 389
AluI AGCT 4 cut(s) 18, 68, 218, 389
Alw26I GTCTC 2 cut(s) 113, 317
ApeKI GCWGC 3 cut(s) 18, 218, 251
ApoI RAATTY 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 407, 430
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 1 cut(s) 262
BbrPI CACGTG 1 cut(s) 428
BbvI GCAGC 3 cut(s) 5, 205, 238
BccI CCATC 2 cut(s) 241, 335
BcoDI GTCTC 2 cut(s) 113, 317
BfaI CTAG 2 cut(s) 41, 320
BglII AGATCT 1 cut(s) 93
BisI GCNGC 6 cut(s) 19, 165, 219, 252, 266, 269
BlsI GCNGC 6 cut(s) 20, 166, 220, 253, 267, 270
BmgBI CACGTC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 2 cut(s) 215, 388
BoxI GACNNNNGTC 1 cut(s) 428
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 62, 329
BsaAI YACGTR 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 128, 269, 302
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse118I RCCGGY 2 cut(s) 235, 406
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 128, 269, 302
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 410
BseXI GCAGC 3 cut(s) 5, 205, 238
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 271
Bsh1285I CGRYCG 1 cut(s) 411
BshNI GGYRCC 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 411
BsiSI CCGG 4 cut(s) 236, 335, 381, 407
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 2 cut(s) 113, 317
Bso31I GGTCTC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 93, 192
BspACI CCGC 9 cut(s) 164, 183, 221, 254, 266, 269, 271, 299, 404
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 317
BsrFI RCCGGY 2 cut(s) 235, 406
BssAI RCCGGY 2 cut(s) 235, 406
BssECI CCNNGG 3 cut(s) 128, 269, 302
BssMI GATC 2 cut(s) 93, 192
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 2 cut(s) 128, 269
BstFNI CGCG 1 cut(s) 271
BstKTI GATC 2 cut(s) 96, 195
BstMAI GTCTC 2 cut(s) 113, 317
BstMBI GATC 2 cut(s) 93, 192
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstPAI GACNNNNGTC 1 cut(s) 428
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 5, 205, 238
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BtgI CCRYGG 2 cut(s) 128, 269
BtrI CACGTC 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 216
Cfr10I RCCGGY 2 cut(s) 235, 406
Cfr42I CCGCGG 1 cut(s) 272
Csp6I GTAC 1 cut(s) 332
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviJI RGCY 8 cut(s) 18, 68, 127, 218, 251, 307, 380, 389
CviKI_1 RGCY 8 cut(s) 18, 68, 127, 218, 251, 307, 380, 389
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 390
DpnI GATC 2 cut(s) 95, 194
DpnII GATC 2 cut(s) 93, 192
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 317
Eco72I CACGTG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
FauI CCCGC 2 cut(s) 176, 247
Fnu4HI GCNGC 6 cut(s) 19, 165, 219, 252, 266, 269
Fsp4HI GCNGC 6 cut(s) 19, 165, 219, 252, 266, 269
FspBI CTAG 2 cut(s) 41, 320
GluI GCNGC 6 cut(s) 19, 165, 219, 252, 266, 269
HapII CCGG 4 cut(s) 236, 335, 381, 407
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 44, 187, 340
HpaII CCGG 4 cut(s) 236, 335, 381, 407
HphI GGTGA 2 cut(s) 407, 430
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 369
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 4 cut(s) 86, 293, 367, 427
HpyCH4V TGCA 3 cut(s) 56, 206, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 4 cut(s) 86, 293, 367, 427
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 2 cut(s) 93, 192
LpnPI CCDG 5 cut(s) 249, 348, 394, 420, 421
Lsp1109I GCAGC 3 cut(s) 5, 205, 238
LweI GCATC 2 cut(s) 215, 388
MaeI CTAG 2 cut(s) 41, 320
MaeII ACGT 4 cut(s) 86, 293, 367, 427
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 95, 194
MboI GATC 2 cut(s) 93, 192
MboII GAAGA 3 cut(s) 23, 254, 335
MflI RGATCY 1 cut(s) 93
MluCI AATT 1 cut(s) 49
MnlI CCTC 4 cut(s) 45, 267, 282, 357
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 4 cut(s) 236, 335, 381, 407
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 2 cut(s) 93, 192
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 44, 187, 340
PflFI GACNNNGTC 1 cut(s) 85
PkrI GCNGC 6 cut(s) 20, 166, 220, 253, 267, 270
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
Ppu21I YACGTR 1 cut(s) 428
PshAI GACNNNNGTC 1 cut(s) 428
PspCI CACGTG 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 93
PsyI GACNNNGTC 1 cut(s) 85
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SacII CCGCGG 1 cut(s) 272
SatI GCNGC 6 cut(s) 19, 165, 219, 252, 266, 269
Sau3AI GATC 2 cut(s) 93, 192
SetI ASST 9 cut(s) 20, 70, 89, 220, 278, 296, 370, 391, 430
SfaNI GCATC 2 cut(s) 215, 388
Sfr303I CCGCGG 1 cut(s) 272
SgrBI CCGCGG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 77, 308
SmoI CTYRAG 2 cut(s) 77, 308
Sse9I AATT 1 cut(s) 49
SsiI CCGC 9 cut(s) 164, 183, 221, 254, 266, 269, 271, 299, 404
SspMI CTAG 2 cut(s) 41, 320
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 4 cut(s) 89, 296, 370, 430
TaqI TCGA 1 cut(s) 364
TasI AATT 1 cut(s) 49
TauI GCSGC 3 cut(s) 167, 268, 271
TfiI GAWTC 3 cut(s) 44, 187, 340
TscAI CASTG 2 cut(s) 78, 216
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 3 cut(s) 18, 218, 251
Tsp45I GTSAC 1 cut(s) 281
TspGWI ACGGA 3 cut(s) 145, 342, 442
TspRI CASTG 2 cut(s) 78, 216
Tth111I GACNNNGTC 1 cut(s) 85
XapI RAATTY 1 cut(s) 49
XspI CTAG 2 cut(s) 41, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.