RchiOBHm_Chr6g0298931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012471
Physical Location & Seq
Forward (+)
60177770 .. 60179037
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26839

Sequence Viewer

Length: 612 bp
ATGATTCGTCTTTCATGGAGGGTCCAACCCACGTGTCTAATTAGAAGCCCTCACCGTCGCGGTCCTCGTCAGTTTCCCCGACTCAACCAAACCCACCTTCCTCTTTTCCTATATGTGATGATTCATCCTACTCCTTGCTTAAAGATCTTGATCGAAGGGAAAGAGAAAATGGCCATTACAAGCTTCAGCTGCAGCCTTAACCAGCTGCCTCCTCCAACTCAAAGCTCAGGCCCTTCTTCTCCTTCAAAGACGAATCAAGTACTACTTGCATGGAAAAAAAGTGATGGAGGATCATGGAGTAGCAGATGTGTTCTGGGCATGACTTGTGTTATGGTTGGGTTGGAGATGGGTGGTTTAGTGAGTGGCCAAAGCCATGAAGCTATAGCTAAAGGTATGCCGTTGGTGATGGAGTCGAGTGAGAAAGTTGCGAAATGGAGTGACAAGAGAATTTGCCCCAAGTGGAGAGCCAATGAGCTGGAGACCATTGTGCCGGAGAACCTTCCGAGGCCGTCGGCTCACCGGAGATGGGAAATCGTCGGTTTTAATACTAGAGATGCTCCGGCGGTTAAAATGGTGGCTAGGAGGAGTACTGGTGGTTGCTTTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.65

Weight (kDa)

10.11

Isoelectric Point (pI)

63.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 60
AciI CCGC 2 cut(s) 60, 563
AclWI GGATC 1 cut(s) 298
AcoI YGGCCR 2 cut(s) 171, 364
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 169
AcvI CACGTG 1 cut(s) 33
AfaI GTAC 2 cut(s) 261, 589
AfiI CCNNNNNNNGG 1 cut(s) 526
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 7 cut(s) 183, 189, 205, 225, 380, 386, 475
AluI AGCT 7 cut(s) 183, 189, 205, 225, 380, 386, 475
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 298
AoxI GGCC 4 cut(s) 171, 229, 364, 506
ApeKI GCWGC 3 cut(s) 189, 192, 205
ApoI RAATTY 1 cut(s) 447
AspS9I GGNCC 3 cut(s) 22, 62, 230
AsuHPI GGTGA 3 cut(s) 44, 415, 509
AvaII GGWCC 2 cut(s) 22, 62
BalI TGGCCA 2 cut(s) 173, 366
BbrPI CACGTG 1 cut(s) 33
BbvI GCAGC 3 cut(s) 176, 192, 204
BccI CCATC 4 cut(s) 278, 340, 400, 519
BceAI ACGGC 2 cut(s) 382, 493
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 2 cut(s) 549, 579
BfmI CTRYAG 2 cut(s) 190, 381
BglII AGATCT 1 cut(s) 144
BisI GCNGC 3 cut(s) 190, 193, 206
BlsI GCNGC 3 cut(s) 191, 194, 207
BmcAI AGTACT 2 cut(s) 261, 589
Bme18I GGWCC 2 cut(s) 22, 62
BmgT120I GGNCC 3 cut(s) 22, 62, 230
BmiI GGNNCC 1 cut(s) 23
BmsI GCATC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 226
BsaAI YACGTR 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 503
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 595
Bse8I GATNNNNATC 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 2 cut(s) 201, 598
BseXI GCAGC 3 cut(s) 176, 192, 204
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 4 cut(s) 173, 231, 366, 508
BsiSI CCGG 3 cut(s) 491, 520, 560
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 4 cut(s) 173, 231, 366, 508
Bso31I GGTCTC 1 cut(s) 473
Bsp143I GATC 3 cut(s) 144, 150, 290
BspACI CCGC 2 cut(s) 60, 563
BspANI GGCC 4 cut(s) 173, 231, 366, 508
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 194
BspPI GGATC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 473
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 3 cut(s) 144, 150, 290
Bst4CI ACNGT 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 147, 153, 293
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 144, 150, 290
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 190, 381
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 176, 192, 204
BstX2I RGATCY 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 4 cut(s) 173, 231, 366, 508
BtsCI GGATG 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 22, 62, 230
Csp6I GTAC 2 cut(s) 260, 588
CviAII CATG 5 cut(s) 15, 270, 294, 319, 374
CviQI GTAC 2 cut(s) 260, 588
DdeI CTNAG 1 cut(s) 226
DpnI GATC 3 cut(s) 146, 152, 292
DpnII GATC 3 cut(s) 144, 150, 290
EaeI YGGCCR 2 cut(s) 171, 364
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 22, 62
Eco57I CTGAAG 1 cut(s) 169
Eco72I CACGTG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 230
FaeI CATG 5 cut(s) 18, 273, 297, 322, 377
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FatI CATG 5 cut(s) 14, 269, 293, 318, 373
Fnu4HI GCNGC 3 cut(s) 190, 193, 206
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 190, 193, 206
FspBI CTAG 2 cut(s) 549, 579
GluI GCNGC 3 cut(s) 190, 193, 206
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 4 cut(s) 173, 231, 366, 508
HapII CCGG 3 cut(s) 491, 520, 560
Hin1II CATG 5 cut(s) 18, 273, 297, 322, 377
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 5 cut(s) 4, 81, 121, 253, 410
HpaII CCGG 3 cut(s) 491, 520, 560
HphI GGTGA 3 cut(s) 44, 415, 509
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 1 cut(s) 148
Hpy99I CGWCG 3 cut(s) 60, 514, 539
HpyAV CCTTC 5 cut(s) 107, 149, 243, 252, 509
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 192, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 5 cut(s) 18, 273, 297, 322, 377
Kzo9I GATC 3 cut(s) 144, 150, 290
LmnI GCTCC 1 cut(s) 562
LpnPI CCDG 8 cut(s) 213, 215, 299, 461, 504, 533, 573, 576
Lsp1109I GCAGC 3 cut(s) 176, 192, 204
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 549, 579
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 437
MalI GATC 3 cut(s) 146, 152, 292
MboI GATC 3 cut(s) 144, 150, 290
MboII GAAGA 1 cut(s) 228
MflI RGATCY 1 cut(s) 144
MlsI TGGCCA 2 cut(s) 173, 366
MluCI AATT 2 cut(s) 39, 447
MluNI TGGCCA 2 cut(s) 173, 366
MlyI GAGTC 2 cut(s) 75, 419
MmeI TCCRAC 3 cut(s) 49, 239, 321
MnlI CCTC 9 cut(s) 12, 60, 75, 111, 219, 222, 281, 498, 576
Mox20I TGGCCA 2 cut(s) 173, 366
MscI TGGCCA 2 cut(s) 173, 366
MseI TTAA 4 cut(s) 140, 198, 543, 567
Msp20I TGGCCA 2 cut(s) 173, 366
MspA1I CMGCKG 2 cut(s) 189, 205
MspI CCGG 3 cut(s) 491, 520, 560
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 3 cut(s) 144, 150, 290
NlaIII CATG 5 cut(s) 18, 273, 297, 322, 377
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PfeI GAWTC 3 cut(s) 4, 121, 253
PkrI GCNGC 3 cut(s) 191, 194, 207
PleI GAGTC 2 cut(s) 75, 418
PmaCI CACGTG 1 cut(s) 33
PmlI CACGTG 1 cut(s) 33
PpsI GAGTC 2 cut(s) 75, 418
Ppu21I YACGTR 1 cut(s) 33
PspCI CACGTG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 3 cut(s) 22, 62, 230
PstI CTGCAG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 144
PvuII CAGCTG 2 cut(s) 189, 205
RsaI GTAC 2 cut(s) 261, 589
RsaNI GTAC 2 cut(s) 260, 588
SaqAI TTAA 4 cut(s) 140, 198, 543, 567
SatI GCNGC 3 cut(s) 190, 193, 206
Sau3AI GATC 3 cut(s) 144, 150, 290
Sau96I GGNCC 3 cut(s) 22, 62, 230
ScaI AGTACT 2 cut(s) 261, 589
SchI GAGTC 2 cut(s) 75, 419
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 2 cut(s) 190, 381
SinI GGWCC 2 cut(s) 22, 62
Sse9I AATT 2 cut(s) 39, 447
SsiI CCGC 2 cut(s) 60, 563
SspMI CTAG 2 cut(s) 549, 579
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 153, 413
TasI AATT 2 cut(s) 39, 447
TatI WGTACW 2 cut(s) 259, 587
TfiI GAWTC 3 cut(s) 4, 121, 253
Tru1I TTAA 4 cut(s) 140, 198, 543, 567
Tru9I TTAA 4 cut(s) 140, 198, 543, 567
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 3 cut(s) 189, 192, 205
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 2 cut(s) 113, 390
VpaK11BI GGWCC 2 cut(s) 22, 62
XapI RAATTY 1 cut(s) 447
XspI CTAG 2 cut(s) 549, 579
ZrmI AGTACT 2 cut(s) 261, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.