Prupe.1G471000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012471
Physical Location & Seq
Reverse (-)
39205596 .. 39206706
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G471000.1

Sequence Viewer

Length: 603 bp
ATGGCTATTACAAACTTCAATTGCTGCCTCAATCCGCCGCCGCCAACTCAAAACCTTGGTTCAAGCCCTTCTTTGCCTTCAAAGCCAAATCAAGTACTTGCATGGTATGTAATTAAACCCAACTTTCTTATATGCCCATATTTGCACTTTCTTGGGAAGAATTTGCGCGGTCTTATAAAATTAAGACGCGTGTTATGTTGGTGTCTAATGACCCAATTGAAAGTTTTGAAAGGGGTATGTTGGTGTCTAATTATGGTAAATACTTGCGTGTGCAGGAACAAAAATGATGGATCATGGACAAAACGATGTGTGTTAGGCATGACAGCCGGCATCATGATTGGGTTGGAAATGGGCAGCTTGGATGCCATTGCCAAAGGCATGCCCTTGCCATTGGTGACAGAATCAAGTGATCAGAGGGTTACAAAATGGAGTGACAAAAGAATGTGCCCGCCGTGGATCCCCAATTCTCTGGAGACCATTGTGCCTGAGAATCTTCCAAGGCCCTCGGCTCAGAGGAGATCGGAAGTCGTTGGGTTTTCGAAGGATGCTCCTGCAGTTAAAACGGTTGTTGTTAGAAGAAGTGGCGGTTGCTTTGCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.19

Weight (kDa)

9.61

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccII CGCG 2 cut(s) 168, 189
AciI CCGC 6 cut(s) 35, 38, 41, 168, 449, 585
AclWI GGATC 3 cut(s) 298, 451, 464
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 96
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 5 cut(s) 19, 63, 81, 220, 229
AluBI AGCT 1 cut(s) 357
AluI AGCT 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 3 cut(s) 298, 451, 464
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 2 cut(s) 24, 354
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 406
AsuII TTCGAA 1 cut(s) 539
BaeGI GKGCMC 1 cut(s) 449
BamHI GGATCC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 11, 366
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 436
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 552
BisI GCNGC 4 cut(s) 25, 38, 41, 355
BlsI GCNGC 4 cut(s) 26, 39, 42, 356
BmcAI AGTACT 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 458
BmsI GCATC 3 cut(s) 339, 352, 535
BpmI CTGGAG 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 4 cut(s) 55, 452, 497, 504
Bse118I RCCGGY 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 366
BseDI CCNNGG 4 cut(s) 55, 452, 497, 504
BseGI GGATG 2 cut(s) 367, 550
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 477, 524
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 2 cut(s) 11, 366
BsgI GTGCAG 1 cut(s) 292
Bsh1236I CGCG 2 cut(s) 168, 189
BshFI GGCC 1 cut(s) 502
BsiSI CCGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 467
BsnI GGCC 1 cut(s) 502
Bso31I GGTCTC 1 cut(s) 467
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 4 cut(s) 290, 409, 456, 518
BspACI CCGC 6 cut(s) 35, 38, 41, 168, 449, 585
BspANI GGCC 1 cut(s) 502
BspCNI CTCAG 2 cut(s) 478, 523
BspFNI CGCG 2 cut(s) 168, 189
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 458
BspMAI CTGCAG 1 cut(s) 556
BspPI GGATC 3 cut(s) 298, 451, 464
BspT104I TTCGAA 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 55, 452, 497, 504
BssMI GATC 4 cut(s) 290, 409, 456, 518
BssT1I CCWWGG 2 cut(s) 55, 497
Bst4CI ACNGT 1 cut(s) 565
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 3 cut(s) 328, 380, 449
BstDEI CTNAG 2 cut(s) 486, 510
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 2 cut(s) 367, 550
BstFNI CGCG 2 cut(s) 168, 189
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 4 cut(s) 293, 412, 459, 521
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 4 cut(s) 290, 409, 456, 518
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 552
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 2 cut(s) 168, 189
BstV1I GCAGC 2 cut(s) 11, 366
BstX2I RGATCY 1 cut(s) 456
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 1 cut(s) 502
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 2 cut(s) 367, 550
Cac8I GCNNGC 3 cut(s) 328, 380, 449
CciI TCATGA 1 cut(s) 333
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 501
CseI GACGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 95
CviAII CATG 6 cut(s) 102, 294, 319, 334, 379, 598
CviJI RGCY 7 cut(s) 5, 66, 85, 326, 357, 502, 509
CviKI_1 RGCY 7 cut(s) 5, 66, 85, 326, 357, 502, 509
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 2 cut(s) 486, 510
DpnI GATC 4 cut(s) 292, 411, 458, 520
DpnII GATC 4 cut(s) 290, 409, 456, 518
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 55, 497
Eco31I GGTCTC 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 501
EcoT14I CCWWGG 2 cut(s) 55, 497
ErhI CCWWGG 2 cut(s) 55, 497
FaeI CATG 6 cut(s) 105, 297, 322, 337, 382, 601
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FatI CATG 6 cut(s) 101, 293, 318, 333, 378, 597
FauI CCCGC 1 cut(s) 456
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 4 cut(s) 25, 38, 41, 355
FokI GGATG 2 cut(s) 374, 557
Fsp4HI GCNGC 4 cut(s) 25, 38, 41, 355
GlaI GCGC 1 cut(s) 167
GluI GCNGC 4 cut(s) 25, 38, 41, 355
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 1 cut(s) 502
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 168
Hin1II CATG 6 cut(s) 105, 297, 322, 337, 382, 601
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 2 cut(s) 401, 490
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 3 cut(s) 414, 513, 523
Hpy188III TCNNGA 2 cut(s) 334, 470
HpyAV CCTTC 3 cut(s) 78, 87, 535
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4V TGCA 4 cut(s) 101, 145, 273, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 2 cut(s) 486, 510
Hsp92II CATG 6 cut(s) 105, 297, 322, 337, 382, 601
HspAI GCGC 1 cut(s) 166
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 4 cut(s) 290, 409, 456, 518
LmnI GCTCC 1 cut(s) 553
LpnPI CCDG 5 cut(s) 259, 340, 455, 498, 564
Lsp1109I GCAGC 2 cut(s) 11, 366
LweI GCATC 3 cut(s) 339, 352, 535
MaeIII GTNAC 3 cut(s) 394, 418, 431
MalI GATC 4 cut(s) 292, 411, 458, 520
MboI GATC 4 cut(s) 290, 409, 456, 518
MboII GAAGA 3 cut(s) 169, 485, 588
MfeI CAATTG 2 cut(s) 19, 215
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 7 cut(s) 19, 111, 160, 179, 215, 249, 463
MluI ACGCGT 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 4 cut(s) 38, 408, 507, 514
MroNI GCCGGC 1 cut(s) 326
MseI TTAA 3 cut(s) 114, 182, 558
MspI CCGG 1 cut(s) 327
MunI CAATTG 2 cut(s) 19, 215
MvnI CGCG 2 cut(s) 168, 189
MwoI GCNNNNNNNGC 1 cut(s) 82
NaeI GCCGGC 1 cut(s) 328
NdeII GATC 4 cut(s) 290, 409, 456, 518
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 6 cut(s) 105, 297, 322, 337, 382, 601
NlaIV GGNNCC 1 cut(s) 458
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 394, 431
NspI RCATGY 1 cut(s) 382
NspV TTCGAA 1 cut(s) 539
PaeI GCATGC 1 cut(s) 382
PagI TCATGA 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 401, 490
PkrI GCNGC 4 cut(s) 26, 39, 42, 356
PsiI TTATAA 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 458
PspPI GGNCC 1 cut(s) 501
PstI CTGCAG 1 cut(s) 556
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 3 cut(s) 114, 182, 558
SatI GCNGC 4 cut(s) 25, 38, 41, 355
Sau3AI GATC 4 cut(s) 290, 409, 456, 518
Sau96I GGNCC 1 cut(s) 501
ScaI AGTACT 1 cut(s) 96
SduI GDGCHC 1 cut(s) 449
SetI ASST 2 cut(s) 57, 359
SfaNI GCATC 3 cut(s) 339, 352, 535
SfcI CTRYAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 539
SphI GCATGC 1 cut(s) 382
Sse9I AATT 7 cut(s) 19, 111, 160, 179, 215, 249, 463
SsiI CCGC 6 cut(s) 35, 38, 41, 168, 449, 585
StyI CCWWGG 2 cut(s) 55, 497
TaaI ACNGT 1 cut(s) 565
TaqI TCGA 1 cut(s) 539
TasI AATT 7 cut(s) 19, 111, 160, 179, 215, 249, 463
TatI WGTACW 1 cut(s) 94
TauI GCSGC 2 cut(s) 40, 43
TfiI GAWTC 2 cut(s) 401, 490
Tru1I TTAA 3 cut(s) 114, 182, 558
Tru9I TTAA 3 cut(s) 114, 182, 558
TseFI GTSAC 2 cut(s) 394, 431
TseI GCWGC 2 cut(s) 24, 354
Tsp45I GTSAC 2 cut(s) 394, 431
XapI RAATTY 1 cut(s) 160
XceI RCATGY 1 cut(s) 382
ZrmI AGTACT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.