Rh6CG409400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012471
Physical Location & Seq
Forward (+)
59495467 .. 59496381
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG409400.1

Sequence Viewer

Length: 498 bp
ATGATGATTCATCCTACTCCTTGCTTAAAGATCTTGATCGAAGGGAAAGAGAAAATGGCCATTACAAGCTTCAGCTGCAGCCTTAACCAGCTGCCTCCTCCAACTCAAAGCTCAGGCCCTTCTTCTCCTTCAAAGACGAATCAAGTACTACTTGCATGGAAAAAAAGTGATGGAGGATCATGGAGTAGCAGATGTGTTCTGGGCATGACTTGTGTTATGGTTGGGTTGGAGATGGGTGGTTTAGTGAGTGGCCAAAGCCATGAAGCTATAGCTAAAGGTATGCCGTTGGTGATGGAGTCGAGTGAGAAAGTTGCGAAATGGAGTGACAAGAGAATTTGCCCCAAGTGGAGAGCCAATGAGCTGGAGACCATTGTGCCGGAGAACCTTCCGAGGCCGTCGGCTCACCGGAGATGGGAAATCGTCGGTTTTAATACTAGAGATGCTCCGGCGGTTAAAATGGTGGCTAGGAGGAGTACTGGTGGTTGCTTTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.01

Weight (kDa)

9.44

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 449
AclWI GGATC 1 cut(s) 184
AcoI YGGCCR 2 cut(s) 57, 250
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 2 cut(s) 147, 475
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 1 cut(s) 132
AluBI AGCT 7 cut(s) 69, 75, 91, 111, 266, 272, 361
AluI AGCT 7 cut(s) 69, 75, 91, 111, 266, 272, 361
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 184
AoxI GGCC 4 cut(s) 57, 115, 250, 392
ApeKI GCWGC 3 cut(s) 75, 78, 91
ApoI RAATTY 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 301, 395
BalI TGGCCA 2 cut(s) 59, 252
BbvI GCAGC 3 cut(s) 62, 78, 90
BccI CCATC 4 cut(s) 164, 226, 286, 405
BceAI ACGGC 2 cut(s) 268, 379
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 2 cut(s) 435, 465
BfmI CTRYAG 2 cut(s) 76, 267
BglII AGATCT 1 cut(s) 30
BisI GCNGC 3 cut(s) 76, 79, 92
BlsI GCNGC 3 cut(s) 77, 80, 93
BmcAI AGTACT 2 cut(s) 147, 475
BmgT120I GGNCC 1 cut(s) 116
BmsI GCATC 1 cut(s) 430
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 481
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 87, 484
BseXI GCAGC 3 cut(s) 62, 78, 90
BshFI GGCC 4 cut(s) 59, 117, 252, 394
BsiSI CCGG 3 cut(s) 377, 406, 446
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 4 cut(s) 59, 117, 252, 394
Bso31I GGTCTC 1 cut(s) 359
Bsp143I GATC 3 cut(s) 30, 36, 176
BspACI CCGC 1 cut(s) 449
BspANI GGCC 4 cut(s) 59, 117, 252, 394
BspCNI CTCAG 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 3 cut(s) 30, 36, 176
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 33, 39, 179
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 30, 36, 176
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSFI CTRYAG 2 cut(s) 76, 267
BstV1I GCAGC 3 cut(s) 62, 78, 90
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 4 cut(s) 59, 117, 252, 394
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 146, 474
CviAII CATG 4 cut(s) 156, 180, 205, 260
CviQI GTAC 2 cut(s) 146, 474
DdeI CTNAG 1 cut(s) 112
DpnI GATC 3 cut(s) 32, 38, 178
DpnII GATC 3 cut(s) 30, 36, 176
EaeI YGGCCR 2 cut(s) 57, 250
Eco31I GGTCTC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 116
FaeI CATG 4 cut(s) 159, 183, 208, 263
FaiI YATR 8 cut(s) 157, 181, 206, 218, 261, 269, 281, 494
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 4 cut(s) 155, 179, 204, 259
Fnu4HI GCNGC 3 cut(s) 76, 79, 92
Fsp4HI GCNGC 3 cut(s) 76, 79, 92
FspBI CTAG 2 cut(s) 435, 465
GluI GCNGC 3 cut(s) 76, 79, 92
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 4 cut(s) 59, 117, 252, 394
HapII CCGG 3 cut(s) 377, 406, 446
Hin1II CATG 4 cut(s) 159, 183, 208, 263
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 3 cut(s) 7, 139, 296
HpaII CCGG 3 cut(s) 377, 406, 446
HphI GGTGA 2 cut(s) 301, 395
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 400, 425
HpyAV CCTTC 4 cut(s) 35, 129, 138, 395
HpyCH4V TGCA 2 cut(s) 78, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 4 cut(s) 159, 183, 208, 263
Kzo9I GATC 3 cut(s) 30, 36, 176
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 8 cut(s) 99, 101, 185, 347, 390, 419, 459, 462
Lsp1109I GCAGC 3 cut(s) 62, 78, 90
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 435, 465
MaeIII GTNAC 1 cut(s) 323
MalI GATC 3 cut(s) 32, 38, 178
MboI GATC 3 cut(s) 30, 36, 176
MboII GAAGA 1 cut(s) 114
MflI RGATCY 1 cut(s) 30
MlsI TGGCCA 2 cut(s) 59, 252
MluCI AATT 1 cut(s) 333
MluNI TGGCCA 2 cut(s) 59, 252
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 2 cut(s) 125, 207
MnlI CCTC 5 cut(s) 105, 108, 167, 384, 462
Mox20I TGGCCA 2 cut(s) 59, 252
MscI TGGCCA 2 cut(s) 59, 252
MseI TTAA 4 cut(s) 26, 84, 429, 453
Msp20I TGGCCA 2 cut(s) 59, 252
MspA1I CMGCKG 2 cut(s) 75, 91
MspI CCGG 3 cut(s) 377, 406, 446
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 3 cut(s) 30, 36, 176
NlaIII CATG 4 cut(s) 159, 183, 208, 263
NmuCI GTSAC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 7, 139
PkrI GCNGC 3 cut(s) 77, 80, 93
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 116
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 30
PvuII CAGCTG 2 cut(s) 75, 91
RsaI GTAC 2 cut(s) 147, 475
RsaNI GTAC 2 cut(s) 146, 474
SaqAI TTAA 4 cut(s) 26, 84, 429, 453
SatI GCNGC 3 cut(s) 76, 79, 92
Sau3AI GATC 3 cut(s) 30, 36, 176
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 2 cut(s) 147, 475
SchI GAGTC 1 cut(s) 305
SetI ASST 9 cut(s) 71, 77, 93, 113, 268, 274, 280, 363, 387
SfaNI GCATC 1 cut(s) 430
SfcI CTRYAG 2 cut(s) 76, 267
Sse9I AATT 1 cut(s) 333
SsiI CCGC 1 cut(s) 449
SspMI CTAG 2 cut(s) 435, 465
TaqI TCGA 2 cut(s) 39, 299
TasI AATT 1 cut(s) 333
TatI WGTACW 2 cut(s) 145, 473
TfiI GAWTC 2 cut(s) 7, 139
Tru1I TTAA 4 cut(s) 26, 84, 429, 453
Tru9I TTAA 4 cut(s) 26, 84, 429, 453
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 3 cut(s) 75, 78, 91
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 276
XapI RAATTY 1 cut(s) 333
XspI CTAG 2 cut(s) 435, 465
ZrmI AGTACT 2 cut(s) 147, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.