Rh6DG396400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012471
Physical Location & Seq
Forward (+)
58731712 .. 58732260
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG396400.1

Sequence Viewer

Length: 444 bp
ATGGCCATTACAAGCTTCAGCTGCAGCCTTAACCAGCTGCCTCCTCCAACTCAAAGCTCAGGCCCTTTTCCCCCGTCAAAGACGAATCAAGTACTACTTGCATGGAACAAAAGTGATGGAGGATCATGGAGTAGCAGATGTGTTCTGGGCATGACTTGTGTTATGGTTGGGTTGGAGATGGGTGGTTTTGTGAGTTGCCAAAGCCATGAAGCTATAGCTAAAGGTATGCCGTTGGTGATGGAGTCAAGTGAGAAAGTTGTGAAATGGAGTGACAAGAGAATTTGCCCAAAGTGGAGAGCCAATGAGCTGGAGACCATTGTGCCGGAGAACCTTCCCAGGCCGTCGGCTCATCGGAGATGGGAAATCGTCGGTTTTACTACTAGGGATGCTCCGGCGGTTAAAATGGTAGCTAGGAGGAGTACTGGTGGTTGCTTTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.1

Weight (kDa)

9.24

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 395
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 2 cut(s) 93, 421
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 8 cut(s) 15, 21, 37, 57, 212, 218, 307, 410
AluI AGCT 8 cut(s) 15, 21, 37, 57, 212, 218, 307, 410
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 130
AoxI GGCC 3 cut(s) 3, 61, 338
ApeKI GCWGC 3 cut(s) 21, 24, 37
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 247
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 8, 24, 36
BccI CCATC 4 cut(s) 110, 172, 232, 351
BceAI ACGGC 2 cut(s) 214, 325
BciT130I CCWGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 381, 411
BfmI CTRYAG 2 cut(s) 22, 213
BisI GCNGC 3 cut(s) 22, 25, 38
BlsI GCNGC 3 cut(s) 23, 26, 39
BmcAI AGTACT 2 cut(s) 93, 421
Bme1390I CCNGG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bse1I ACTGG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 33, 430
BseXI GCAGC 3 cut(s) 8, 24, 36
BshFI GGCC 3 cut(s) 5, 63, 340
BsiSI CCGG 2 cut(s) 323, 392
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 3 cut(s) 5, 63, 340
Bso31I GGTCTC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 1 cut(s) 395
BspANI GGCC 3 cut(s) 5, 63, 340
BspCNI CTCAG 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 26
BspPI GGATC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 2 cut(s) 22, 213
BstV1I GCAGC 3 cut(s) 8, 24, 36
BstXI CCANNNNNNTGG 1 cut(s) 307
BsuRI GGCC 3 cut(s) 5, 63, 340
BtsCI GGATG 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 92, 420
CviAII CATG 4 cut(s) 102, 126, 151, 206
CviQI GTAC 2 cut(s) 92, 420
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 335
FaeI CATG 4 cut(s) 105, 129, 154, 209
FaiI YATR 8 cut(s) 103, 127, 152, 164, 207, 215, 227, 440
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 4 cut(s) 101, 125, 150, 205
Fnu4HI GCNGC 3 cut(s) 22, 25, 38
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 3 cut(s) 22, 25, 38
FspBI CTAG 2 cut(s) 381, 411
GluI GCNGC 3 cut(s) 22, 25, 38
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 3 cut(s) 5, 63, 340
HapII CCGG 2 cut(s) 323, 392
Hin1II CATG 4 cut(s) 105, 129, 154, 209
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 85, 242
HpaII CCGG 2 cut(s) 323, 392
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 354
Hpy99I CGWCG 2 cut(s) 346, 371
HpyAV CCTTC 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 24, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 4 cut(s) 105, 129, 154, 209
Kzo9I GATC 1 cut(s) 122
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 9 cut(s) 45, 47, 131, 293, 322, 336, 349, 405, 408
Lsp1109I GCAGC 3 cut(s) 8, 24, 36
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 381, 411
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 71, 153
MnlI CCTC 4 cut(s) 51, 54, 113, 408
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 30, 399
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 21, 37
MspI CCGG 2 cut(s) 323, 392
MspR9I CCNGG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 1 cut(s) 122
NlaIII CATG 4 cut(s) 105, 129, 154, 209
NmuCI GTSAC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 3 cut(s) 23, 26, 39
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 26
PvuII CAGCTG 2 cut(s) 21, 37
RsaI GTAC 2 cut(s) 93, 421
RsaNI GTAC 2 cut(s) 92, 420
SaqAI TTAA 2 cut(s) 30, 399
SatI GCNGC 3 cut(s) 22, 25, 38
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 1 cut(s) 62
ScaI AGTACT 2 cut(s) 93, 421
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 337
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 2 cut(s) 22, 213
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 395
SspMI CTAG 2 cut(s) 381, 411
StyD4I CCNGG 1 cut(s) 335
TasI AATT 1 cut(s) 279
TatI WGTACW 2 cut(s) 91, 419
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 30, 399
Tru9I TTAA 2 cut(s) 30, 399
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 21, 24, 37
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 222
XapI RAATTY 1 cut(s) 279
XspI CTAG 2 cut(s) 381, 411
ZrmI AGTACT 2 cut(s) 93, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.