Rh6BG403700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012471
Physical Location & Seq
Forward (+)
63045818 .. 63046663
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG403700.1

Sequence Viewer

Length: 495 bp
ATGATTCATCCTCCTACTCCTTGCTTAAAGGTCTTGATCAAAAGGAAAAGAGAAATGGCCATTACAAGCTTCAGCTGCAGCCTTAACCAGCTGCCTCCTCCAACTCAAAGCTCAGGCCCTTCTCCTTCAAAGACGAATCAAGTACTACTTGCATGGAACAAAAGTGATGGAGGATCATGGAGTAGCAGATGTGTTCTGGGCATGACTTGTGTTATCGTTGGGTTGGAGATGGGTGGTTTAGTGAGTGGCCAAAGCTATGAAGCTATAGCTAAAGGTATGCCGTTGGTGATGGAGTCAAGTGAGAAAGTTGCGAAATGGAGTGACAAGAGAATTTGCCCCAAGTGGAGAGCCAATGAGCTGGAGACCATTGTGCCGGAGAACCTTCCGAGGCCGTCTGCTCACCGGAGATGGGAAATCGTCGGTTTTAATACTAGGGATACTCCTGCGGTTAAAATGGTAGCTAGGAGGAGTACTGGTGGTTGCTTTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.03

Weight (kDa)

9.69

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 446
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 2 cut(s) 57, 247
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 2 cut(s) 144, 472
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 1 cut(s) 129
AluBI AGCT 9 cut(s) 69, 75, 91, 111, 255, 263, 269, 358, 461
AluI AGCT 9 cut(s) 69, 75, 91, 111, 255, 263, 269, 358, 461
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 1 cut(s) 181
AoxI GGCC 4 cut(s) 57, 115, 247, 389
ApeKI GCWGC 3 cut(s) 75, 78, 91
ApoI RAATTY 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 298, 392
BalI TGGCCA 2 cut(s) 59, 249
BbvI GCAGC 3 cut(s) 62, 78, 90
BccI CCATC 4 cut(s) 161, 223, 283, 402
BceAI ACGGC 2 cut(s) 265, 376
BciVI GTATCC 1 cut(s) 430
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 2 cut(s) 432, 462
BfmI CTRYAG 2 cut(s) 76, 264
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 3 cut(s) 76, 79, 92
BlsI GCNGC 3 cut(s) 77, 80, 93
BmcAI AGTACT 2 cut(s) 144, 472
BmgT120I GGNCC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 386
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 7
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 87, 481
BseXI GCAGC 3 cut(s) 62, 78, 90
BshFI GGCC 4 cut(s) 59, 117, 249, 391
BsiSI CCGG 2 cut(s) 374, 403
BslI CCNNNNNNNGG 1 cut(s) 409
BsmAI GTCTC 1 cut(s) 356
BsnI GGCC 4 cut(s) 59, 117, 249, 391
Bso31I GGTCTC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 36, 173
BspACI CCGC 1 cut(s) 446
BspANI GGCC 4 cut(s) 59, 117, 249, 391
BspCNI CTCAG 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 2 cut(s) 36, 173
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 7
BstKTI GATC 2 cut(s) 39, 176
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 36, 173
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSFI CTRYAG 2 cut(s) 76, 264
BstV1I GCAGC 3 cut(s) 62, 78, 90
BstXI CCANNNNNNTGG 1 cut(s) 358
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 4 cut(s) 59, 117, 249, 391
BtsCI GGATG 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 143, 471
CviAII CATG 3 cut(s) 153, 177, 202
CviQI GTAC 2 cut(s) 143, 471
DdeI CTNAG 1 cut(s) 112
DpnI GATC 2 cut(s) 38, 175
DpnII GATC 2 cut(s) 36, 173
EaeI YGGCCR 2 cut(s) 57, 247
Eco31I GGTCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 116
FaeI CATG 3 cut(s) 156, 180, 205
FaiI YATR 7 cut(s) 154, 178, 203, 258, 266, 278, 491
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 3 cut(s) 152, 176, 201
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 76, 79, 92
Fsp4HI GCNGC 3 cut(s) 76, 79, 92
FspBI CTAG 2 cut(s) 432, 462
GluI GCNGC 3 cut(s) 76, 79, 92
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 4 cut(s) 59, 117, 249, 391
HapII CCGG 2 cut(s) 374, 403
Hin1II CATG 3 cut(s) 156, 180, 205
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 3 cut(s) 4, 136, 293
HpaII CCGG 2 cut(s) 374, 403
HphI GGTGA 2 cut(s) 298, 392
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 3 cut(s) 129, 135, 392
HpyCH4V TGCA 2 cut(s) 78, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 3 cut(s) 156, 180, 205
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 2 cut(s) 36, 173
LpnPI CCDG 8 cut(s) 99, 101, 182, 344, 387, 416, 456, 459
Lsp1109I GCAGC 3 cut(s) 62, 78, 90
MaeI CTAG 2 cut(s) 432, 462
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 38, 175
MboI GATC 2 cut(s) 36, 173
MlsI TGGCCA 2 cut(s) 59, 249
MluCI AATT 1 cut(s) 330
MluNI TGGCCA 2 cut(s) 59, 249
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 2 cut(s) 125, 204
MnlI CCTC 6 cut(s) 21, 105, 108, 164, 381, 459
Mox20I TGGCCA 2 cut(s) 59, 249
MscI TGGCCA 2 cut(s) 59, 249
MseI TTAA 4 cut(s) 26, 84, 426, 450
Msp20I TGGCCA 2 cut(s) 59, 249
MspA1I CMGCKG 2 cut(s) 75, 91
MspI CCGG 2 cut(s) 374, 403
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 2 cut(s) 36, 173
NlaIII CATG 3 cut(s) 156, 180, 205
NmuCI GTSAC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 4, 136
PkrI GCNGC 3 cut(s) 77, 80, 93
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 116
PstI CTGCAG 1 cut(s) 80
PvuII CAGCTG 2 cut(s) 75, 91
RsaI GTAC 2 cut(s) 144, 472
RsaNI GTAC 2 cut(s) 143, 471
SaqAI TTAA 4 cut(s) 26, 84, 426, 450
SatI GCNGC 3 cut(s) 76, 79, 92
Sau3AI GATC 2 cut(s) 36, 173
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 2 cut(s) 144, 472
SchI GAGTC 1 cut(s) 302
SfcI CTRYAG 2 cut(s) 76, 264
Sse9I AATT 1 cut(s) 330
SsiI CCGC 1 cut(s) 446
SspMI CTAG 2 cut(s) 432, 462
TasI AATT 1 cut(s) 330
TatI WGTACW 2 cut(s) 142, 470
TfiI GAWTC 2 cut(s) 4, 136
Tru1I TTAA 4 cut(s) 26, 84, 426, 450
Tru9I TTAA 4 cut(s) 26, 84, 426, 450
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 75, 78, 91
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 273
XapI RAATTY 1 cut(s) 330
XspI CTAG 2 cut(s) 432, 462
ZrmI AGTACT 2 cut(s) 144, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.