Rw6G034620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0012471
Physical Location & Seq
Forward (+)
59237139 .. 59237663
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034620.1

Sequence Viewer

Length: 444 bp
ATGGCCATTACAAGCTTCAGCTGCAGCCTTAACCAGCTGCCTCCTCCAACTCAAAGCTCAGGCCCTTCTTCTCCTTCAAAGACGAATCAAGTACTACTTGCATGGAAAAAAAGTGATGGAGGATCATGGAGCAGCAGATGTGTTCTGGGCATGACTTGTGTTATGGTTGGGTTGGAGATGGGTGGTTTAGTGAGTGGCCAAAGCCATGAAGCTATAGCTAAAGGTATGCCGTTGGTGATGGAGTCGAGTGAGAAAGTTGCGAAATGGAGTGACAAGAGAATTTGCCCCAAGTGGAGAGCCAATGAGCTGGAGACCATTGTGCCGGAGAACCTTCCGAGGCCGTCAGCTCACCGGAGATGGGAAATCGTCGGTTTTAATACTAGGGATGCTCCGGCGGTTAAAATGGTGGCTAGGAGGAGTACTGGTGGTTGCTTTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.95

Weight (kDa)

9.5

Isoelectric Point (pI)

63.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 395
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 2 cut(s) 3, 196
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 2 cut(s) 93, 421
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 1 cut(s) 78
AluBI AGCT 8 cut(s) 15, 21, 37, 57, 212, 218, 307, 347
AluI AGCT 8 cut(s) 15, 21, 37, 57, 212, 218, 307, 347
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 130
AoxI GGCC 4 cut(s) 3, 61, 196, 338
ApeKI GCWGC 4 cut(s) 21, 24, 37, 132
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 247, 341
BalI TGGCCA 2 cut(s) 5, 198
BbvI GCAGC 4 cut(s) 8, 24, 36, 144
BccI CCATC 4 cut(s) 110, 172, 232, 351
BceAI ACGGC 2 cut(s) 214, 325
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 381, 411
BfmI CTRYAG 2 cut(s) 22, 213
BisI GCNGC 4 cut(s) 22, 25, 38, 133
BlsI GCNGC 4 cut(s) 23, 26, 39, 134
BmcAI AGTACT 2 cut(s) 93, 421
BmgT120I GGNCC 1 cut(s) 62
BmsI GCATC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 427
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 33, 430
BseXI GCAGC 4 cut(s) 8, 24, 36, 144
BshFI GGCC 4 cut(s) 5, 63, 198, 340
BsiSI CCGG 3 cut(s) 323, 352, 392
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 4 cut(s) 5, 63, 198, 340
Bso31I GGTCTC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 1 cut(s) 395
BspANI GGCC 4 cut(s) 5, 63, 198, 340
BspCNI CTCAG 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 26
BspPI GGATC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 22, 213
BstV1I GCAGC 4 cut(s) 8, 24, 36, 144
BstXI CCANNNNNNTGG 1 cut(s) 307
BsuRI GGCC 4 cut(s) 5, 63, 198, 340
BtsCI GGATG 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 92, 420
CviAII CATG 4 cut(s) 102, 126, 151, 206
CviQI GTAC 2 cut(s) 92, 420
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
EaeI YGGCCR 2 cut(s) 3, 196
Eco31I GGTCTC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 62
FaeI CATG 4 cut(s) 105, 129, 154, 209
FaiI YATR 8 cut(s) 103, 127, 152, 164, 207, 215, 227, 440
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 4 cut(s) 101, 125, 150, 205
Fnu4HI GCNGC 4 cut(s) 22, 25, 38, 133
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 4 cut(s) 22, 25, 38, 133
FspBI CTAG 2 cut(s) 381, 411
GluI GCNGC 4 cut(s) 22, 25, 38, 133
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 4 cut(s) 5, 63, 198, 340
HapII CCGG 3 cut(s) 323, 352, 392
Hin1II CATG 4 cut(s) 105, 129, 154, 209
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 85, 242
HpaII CCGG 3 cut(s) 323, 352, 392
HphI GGTGA 2 cut(s) 247, 341
Hpy188I TCNGA 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 75, 84, 341
HpyCH4V TGCA 2 cut(s) 24, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 4 cut(s) 105, 129, 154, 209
Kzo9I GATC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 129, 394
LpnPI CCDG 8 cut(s) 45, 47, 131, 293, 336, 365, 405, 408
Lsp1109I GCAGC 4 cut(s) 8, 24, 36, 144
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 381, 411
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 60
MlsI TGGCCA 2 cut(s) 5, 198
MluCI AATT 1 cut(s) 279
MluNI TGGCCA 2 cut(s) 5, 198
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 71, 153
MnlI CCTC 5 cut(s) 51, 54, 113, 330, 408
Mox20I TGGCCA 2 cut(s) 5, 198
MscI TGGCCA 2 cut(s) 5, 198
MseI TTAA 3 cut(s) 30, 375, 399
Msp20I TGGCCA 2 cut(s) 5, 198
MspA1I CMGCKG 2 cut(s) 21, 37
MspI CCGG 3 cut(s) 323, 352, 392
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 1 cut(s) 122
NlaIII CATG 4 cut(s) 105, 129, 154, 209
NmuCI GTSAC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 4 cut(s) 23, 26, 39, 134
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 26
PvuII CAGCTG 2 cut(s) 21, 37
RsaI GTAC 2 cut(s) 93, 421
RsaNI GTAC 2 cut(s) 92, 420
SaqAI TTAA 3 cut(s) 30, 375, 399
SatI GCNGC 4 cut(s) 22, 25, 38, 133
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 1 cut(s) 62
ScaI AGTACT 2 cut(s) 93, 421
SchI GAGTC 1 cut(s) 251
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 2 cut(s) 22, 213
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 395
SspMI CTAG 2 cut(s) 381, 411
TaqI TCGA 1 cut(s) 245
TasI AATT 1 cut(s) 279
TatI WGTACW 2 cut(s) 91, 419
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 3 cut(s) 30, 375, 399
Tru9I TTAA 3 cut(s) 30, 375, 399
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 4 cut(s) 21, 24, 37, 132
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 222
XapI RAATTY 1 cut(s) 279
XspI CTAG 2 cut(s) 381, 411
ZrmI AGTACT 2 cut(s) 93, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.