FvH4_2g29860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012471
Physical Location & Seq
Forward (+)
23105845 .. 23106956
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29860.t1

Sequence Viewer

Length: 609 bp
ATGATTCCGTCTTTCATGGAGGCTAGGGTCCAACCCACGTGTCCAATTACAAACTCTCACCGTCCCAGTCCTTGTCTGTTGCCCCAACTCAACCGAACCCACCTCTTTTCCTATATATCTGCCTCCTTCTTGCGTAAAGATCTTGATCTAAGAGAGAGACAAATGGCCATGACAAGCTTCAGCTGCAGCCTTAACCAGCTGCCGCCTCCAGCTCAAAGCTTAGGCCCTTCTTCCCCTTCAAAGACGAATCAAGTACAACTTGCATGGAACAAAAGCGAGGGAGGATCATGGAGTAGCAGATGTGTTGTGGGCATGGCTTGTGTTATGGTTGGGTTGGAGATGGGTGGTTTGGTGAGTGGCCAAAGCCATGAAGCTATTGCTAAAGGTATGCCGCCGTTGGTGATGGAGTCAAGTGAGAAAGTTGCAAAGTGGAGTGACAAGAGAATGTGCCCAAAGTGGAGAGCCAATGAGCTGGAGACCATTGTGCCGGAGAATCTTCCGAGGCCGTCGGCTCACCGGAGATGGGAAATCGTCGGGTTTAATACTAGGGATGCTCCGGCGGTTAAGACGGTAGCTAGGAGGAGTAGCGGTGGTTGCTTTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.3

Weight (kDa)

9.53

Isoelectric Point (pI)

66.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25625 AT2G25625
fragaria_vesca FvH4_2g29860
malus_domestica MD08G1140700.v1.1 MD15G1117600.v1.1
prunus_persica Prupe.1G471000_v2.0.a1 Prupe.1G471000_v2.0.a1
pyrus_communis pycom15g10600
rosa_chinensis RchiOBHm_Chr6g0298931
rosa_laevigata RLG00000011472
rosa_multiflora Rmu_sc0021921.1_g000001 Rmu_sc0021922.1_g000001
rosa_roxburghii Rroxscaffold_7G00169200
rosa_rugosa Rorug06G0283800
rosa_samantha Rh6AG395600 Rh6BG403700 Rh6CG409400 Rh6DG396400
rosa_wichuraiana Rw6G034620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 203, 392, 560, 588
AclWI GGATC 1 cut(s) 292
AcoI YGGCCR 2 cut(s) 165, 358
AcuI CTGAAG 1 cut(s) 163
AcvI CACGTG 1 cut(s) 39
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 523
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 1 cut(s) 240
AluBI AGCT 8 cut(s) 177, 183, 199, 212, 219, 374, 472, 575
AluI AGCT 8 cut(s) 177, 183, 199, 212, 219, 374, 472, 575
Alw26I GTCTC 2 cut(s) 151, 470
AlwI GGATC 1 cut(s) 292
AoxI GGCC 4 cut(s) 165, 223, 358, 503
ApeKI GCWGC 3 cut(s) 183, 186, 199
AspS9I GGNCC 2 cut(s) 28, 224
AsuHPI GGTGA 4 cut(s) 50, 364, 412, 506
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 2 cut(s) 167, 360
BbrPI CACGTG 1 cut(s) 39
BbvI GCAGC 3 cut(s) 170, 186, 198
BccI CCATC 3 cut(s) 334, 397, 516
BceAI ACGGC 2 cut(s) 379, 490
BcoDI GTCTC 2 cut(s) 151, 470
BfaI CTAG 3 cut(s) 24, 546, 576
BfmI CTRYAG 1 cut(s) 184
BglII AGATCT 1 cut(s) 139
BisI GCNGC 5 cut(s) 184, 187, 200, 203, 392
BlsI GCNGC 5 cut(s) 185, 188, 201, 204, 393
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 224
BmiI GGNNCC 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 192, 494
Bpu10I CCTNAGC 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 500
BsaWI WCCGGW 1 cut(s) 516
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 500
BseGI GGATG 1 cut(s) 556
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 523
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 595
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 3 cut(s) 170, 186, 198
BshFI GGCC 4 cut(s) 167, 225, 360, 505
BsiSI CCGG 3 cut(s) 488, 517, 557
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 2 cut(s) 151, 470
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 4 cut(s) 167, 225, 360, 505
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 3 cut(s) 139, 145, 284
BspACI CCGC 4 cut(s) 203, 392, 560, 588
BspANI GGCC 4 cut(s) 167, 225, 360, 505
BspLI GGNNCC 1 cut(s) 29
BspMAI CTGCAG 1 cut(s) 188
BspPI GGATC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 470
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 500
BssMI GATC 3 cut(s) 139, 145, 284
Bst4CI ACNGT 2 cut(s) 62, 571
BstBAI YACGTR 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 149, 220
BstF5I GGATG 1 cut(s) 556
BstKTI GATC 3 cut(s) 142, 148, 287
BstMAI GTCTC 2 cut(s) 151, 470
BstMBI GATC 3 cut(s) 139, 145, 284
BstMWI GCNNNNNNNGC 2 cut(s) 183, 594
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 170, 186, 198
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 4 cut(s) 167, 225, 360, 505
BtsCI GGATG 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 28, 224
Csp6I GTAC 1 cut(s) 254
CviAII CATG 6 cut(s) 16, 169, 264, 288, 313, 368
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 149, 220
DpnI GATC 3 cut(s) 141, 147, 286
DpnII GATC 3 cut(s) 139, 145, 284
EaeI YGGCCR 2 cut(s) 165, 358
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 163
Eco72I CACGTG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 224
FaeI CATG 6 cut(s) 19, 172, 267, 291, 316, 371
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 1 cut(s) 48
FatI CATG 6 cut(s) 15, 168, 263, 287, 312, 367
Fnu4HI GCNGC 5 cut(s) 184, 187, 200, 203, 392
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 5 cut(s) 184, 187, 200, 203, 392
FspBI CTAG 3 cut(s) 24, 546, 576
GluI GCNGC 5 cut(s) 184, 187, 200, 203, 392
GsuI CTGGAG 2 cut(s) 192, 494
HaeIII GGCC 4 cut(s) 167, 225, 360, 505
HapII CCGG 3 cut(s) 488, 517, 557
Hin1II CATG 6 cut(s) 19, 172, 267, 291, 316, 371
HindIII AAGCTT 2 cut(s) 175, 217
HinfI GANTC 4 cut(s) 4, 247, 407, 493
HpaII CCGG 3 cut(s) 488, 517, 557
HphI GGTGA 4 cut(s) 50, 364, 412, 506
Hpy188I TCNGA 1 cut(s) 501
Hpy188III TCNNGA 1 cut(s) 143
Hpy99I CGWCG 2 cut(s) 511, 536
HpyAV CCTTC 3 cut(s) 136, 237, 246
HpyCH4III ACNGT 2 cut(s) 62, 571
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 186, 263, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 594
HpyF3I CTNAG 2 cut(s) 149, 220
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 6 cut(s) 19, 172, 267, 291, 316, 371
Kzo9I GATC 3 cut(s) 139, 145, 284
LmnI GCTCC 1 cut(s) 559
LpnPI CCDG 7 cut(s) 79, 209, 222, 458, 501, 530, 570
Lsp1109I GCAGC 3 cut(s) 170, 186, 198
LweI GCATC 1 cut(s) 541
MaeI CTAG 3 cut(s) 24, 546, 576
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 434
MalI GATC 3 cut(s) 141, 147, 286
MboI GATC 3 cut(s) 139, 145, 284
MboII GAAGA 2 cut(s) 222, 488
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 452
MlsI TGGCCA 2 cut(s) 167, 360
MluCI AATT 1 cut(s) 45
MluNI TGGCCA 2 cut(s) 167, 360
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 55, 315
MnlI CCTC 8 cut(s) 13, 113, 133, 216, 271, 275, 495, 573
Mox20I TGGCCA 2 cut(s) 167, 360
MscI TGGCCA 2 cut(s) 167, 360
MseI TTAA 3 cut(s) 192, 540, 564
Msp20I TGGCCA 2 cut(s) 167, 360
MspA1I CMGCKG 2 cut(s) 183, 199
MspI CCGG 3 cut(s) 488, 517, 557
MwoI GCNNNNNNNGC 2 cut(s) 183, 594
NdeII GATC 3 cut(s) 139, 145, 284
NlaIII CATG 6 cut(s) 19, 172, 267, 291, 316, 371
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 4, 247, 493
PkrI GCNGC 5 cut(s) 185, 188, 201, 204, 393
PleI GAGTC 1 cut(s) 415
PmaCI CACGTG 1 cut(s) 39
PmlI CACGTG 1 cut(s) 39
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 39
PspCI CACGTG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 28, 224
PstI CTGCAG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 183, 199
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 192, 540, 564
SatI GCNGC 5 cut(s) 184, 187, 200, 203, 392
Sau3AI GATC 3 cut(s) 139, 145, 284
Sau96I GGNCC 2 cut(s) 28, 224
SchI GAGTC 1 cut(s) 416
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 1 cut(s) 28
Sse9I AATT 1 cut(s) 45
SsiI CCGC 4 cut(s) 203, 392, 560, 588
SspMI CTAG 3 cut(s) 24, 546, 576
TaaI ACNGT 2 cut(s) 62, 571
TaiI ACGT 1 cut(s) 41
TasI AATT 1 cut(s) 45
TatI WGTACW 1 cut(s) 253
TauI GCSGC 2 cut(s) 205, 394
TfiI GAWTC 3 cut(s) 4, 247, 493
Tru1I TTAA 3 cut(s) 192, 540, 564
Tru9I TTAA 3 cut(s) 192, 540, 564
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 183, 186, 199
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 4, 384
VpaK11BI GGWCC 1 cut(s) 28
XspI CTAG 3 cut(s) 24, 546, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.