Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Reverse (-)

11034652 .. 11038191

Gene Structure 3540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGGATTTCTACAGAGACGCAGCAAATTGCGGCTTCAGAGGCTGCACAAAAGAGATGGACTACAAGCGATTTCGATATCGGAAAGCCACTTGGTAGAGGAAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCGATCACATTGTGGCTTTAAAGGTTCTTTTTAAGGCTCAGCTTCAACAATCTCAAGTTGAACACCAGTTACGAAGGGAAGTAGAGATTCAATCTCATCTTCGGCATCCCAATATTCTGCGGCTCTACGGTTACTTCTATGATCAGAAAAGAGTTTATTTGATTTTGGAGTATGCTGTAAGGGGTGAGCTTTATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGCTAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATATAAAACCTGAAAATCTGTTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGATTTTGGATGGTCAGTACACACATTCAACCGTAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCACCTGAGATGGTGGAAAGCGTTGAACATGATGCGAGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAATTTCTTTATGGTGTTCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAAAGGATTGTTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTGTCATCATCTGCAAAGGACCTGATTAGCCAGATGTTGGTTAAGGAGTCTACGCAACGTTTGGCCTTGCACAAGCTTCTTGAACACCCGTGGATTGTGCAAAACGCAGACCCATCAGGCCTTTACAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

288

Amino Acids

33.31

Weight (kDa)

9.1

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	87 - 337	9.2e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	88 - 333	3e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	782
AciI	CCGC	2 cut(s)	32, 259
AclI	AACGTT	1 cut(s)	790
AclWI	GGATC	1 cut(s)	714
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	621, 635
AcuI	CTGAAG	3 cut(s)	21, 326, 343
AdeI	CACNNNGTG	1 cut(s)	151
AfaI	GTAC	2 cut(s)	356, 513
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	7 cut(s)	185, 200, 230, 523, 587, 701, 815
AjnI	CCWGG	1 cut(s)	665
AloI	GAACNNNNNNTCC	2 cut(s)	698, 730
AluBI	AGCT	5 cut(s)	181, 328, 340, 484, 808
AluI	AGCT	5 cut(s)	181, 328, 340, 484, 808
Alw21I	GWGCWC	2 cut(s)	475, 486
Alw26I	GTCTC	2 cut(s)	11, 674
AlwI	GGATC	1 cut(s)	714
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	4 cut(s)	109, 663, 795, 850
ApeKI	GCWGC	3 cut(s)	22, 44, 374
ApoI	RAATTY	2 cut(s)	621, 635
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	335, 491
AvaII	GGWCC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	406, 486
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
Bbv12I	GWGCWC	2 cut(s)	475, 486
BbvI	GCAGC	3 cut(s)	31, 34, 386
BccI	CCATC	4 cut(s)	51, 498, 565, 853
BciT130I	CCWGG	1 cut(s)	667
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	11, 674
BfaI	CTAG	3 cut(s)	122, 399, 617
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	5 cut(s)	23, 33, 45, 260, 375
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	5 cut(s)	24, 34, 46, 261, 376
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	667
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmrFI	CCNGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	253, 583
Bpu10I	CCTNAGC	1 cut(s)	474
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	3 cut(s)	177, 470, 695
BsaJI	CCNNGG	3 cut(s)	418, 666, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	3 cut(s)	418, 666, 821
BseGI	GGATG	2 cut(s)	244, 509
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMII	CTCAG	3 cut(s)	191, 488, 558
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	31, 34, 386
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	4 cut(s)	111, 665, 797, 852
BsiHKAI	GWGCWC	2 cut(s)	475, 486
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	2 cut(s)	11, 674
BsmBI	CGTCTC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	4 cut(s)	111, 665, 797, 852
Bsp1286I	GDGCHC	3 cut(s)	406, 475, 486
Bsp143I	GATC	3 cut(s)	142, 280, 706
Bsp1720I	GCTNAGC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	2 cut(s)	32, 259
BspANI	GGCC	4 cut(s)	111, 665, 797, 852
BspCNI	CTCAG	3 cut(s)	190, 487, 559
BspPI	GGATC	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	3 cut(s)	418, 666, 821
BssMI	GATC	3 cut(s)	142, 280, 706
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	2 cut(s)	269, 527
BstDEI	CTNAG	3 cut(s)	177, 474, 567
BstDSI	CCRYGG	2 cut(s)	418, 821
BstF5I	GGATG	2 cut(s)	244, 509
BstKTI	GATC	3 cut(s)	145, 283, 709
BstMAI	GTCTC	2 cut(s)	11, 674
BstMBI	GATC	3 cut(s)	142, 280, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 395
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	31, 34, 386
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	4 cut(s)	111, 665, 797, 852
BtgI	CCRYGG	2 cut(s)	418, 821
BtsCI	GGATG	2 cut(s)	244, 509
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	2 cut(s)	28, 378
Csp6I	GTAC	2 cut(s)	355, 512
CviAII	CATG	4 cut(s)	113, 419, 428, 590
CviQI	GTAC	2 cut(s)	355, 512
DdeI	CTNAG	3 cut(s)	177, 474, 567
DpnI	GATC	3 cut(s)	144, 282, 708
DpnII	GATC	3 cut(s)	142, 280, 706
DraI	TTTAAA	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	418
Eco147I	AGGCCT	1 cut(s)	852
Eco24I	GRGCYC	2 cut(s)	406, 486
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	3 cut(s)	21, 326, 343
EcoICRI	GAGCTC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	665
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	406, 486
ErhI	CCWWGG	1 cut(s)	418
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	4 cut(s)	116, 422, 431, 593
FatI	CATG	4 cut(s)	112, 418, 427, 589
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	5 cut(s)	23, 33, 45, 260, 375
FokI	GGATG	2 cut(s)	231, 516
FriOI	GRGCYC	2 cut(s)	406, 486
Fsp4HI	GCNGC	5 cut(s)	23, 33, 45, 260, 375
FspBI	CTAG	3 cut(s)	122, 399, 617
GluI	GCNGC	5 cut(s)	23, 33, 45, 260, 375
HaeIII	GGCC	4 cut(s)	111, 665, 797, 852
HgaI	GACGC	2 cut(s)	28, 378
Hin1II	CATG	4 cut(s)	116, 422, 431, 593
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	3 cut(s)	226, 613, 779
HphI	GGTGA	2 cut(s)	335, 491
Hpy166II	GTNNAC	2 cut(s)	514, 783
Hpy188I	TCNGA	5 cut(s)	40, 83, 285, 345, 679
Hpy188III	TCNNGA	2 cut(s)	487, 812
Hpy8I	GTNNAC	2 cut(s)	514, 783
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	3 cut(s)	207, 525, 569
HpyCH4III	ACNGT	2 cut(s)	269, 527
HpyCH4IV	ACGT	2 cut(s)	367, 790
HpyCH4V	TGCA	6 cut(s)	47, 351, 494, 746, 802, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 395
HpyF3I	CTNAG	3 cut(s)	177, 474, 567
HpySE526I	ACGT	2 cut(s)	367, 790
Hsp92II	CATG	4 cut(s)	116, 422, 431, 593
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	142, 280, 706
LmnI	GCTCC	2 cut(s)	138, 670
LpnPI	CCDG	9 cut(s)	218, 461, 465, 579, 652, 679, 767, 776, 834
Lsp1109I	GCAGC	3 cut(s)	31, 34, 386
LweI	GCATC	2 cut(s)	253, 583
MaeI	CTAG	3 cut(s)	122, 399, 617
MaeII	ACGT	2 cut(s)	367, 790
MaeIII	GTNAC	2 cut(s)	207, 269
MalI	GATC	3 cut(s)	144, 282, 708
MboI	GATC	3 cut(s)	142, 280, 706
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	3 cut(s)	406, 475, 486
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	4 cut(s)	27, 432, 621, 635
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	622, 788
MnlI	CCTC	7 cut(s)	34, 92, 416, 655, 663, 729, 854
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	3 cut(s)	158, 171, 774
Msp20I	TGGCCA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	667
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	2 cut(s)	41, 395
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	3 cut(s)	142, 280, 706
NlaIII	CATG	4 cut(s)	116, 422, 431, 593
NspI	RCATGY	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	852
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	5 cut(s)	24, 34, 46, 261, 376
PleI	GAGTC	2 cut(s)	621, 787
PpsI	GAGTC	2 cut(s)	621, 787
PpuMI	RGGWCCY	1 cut(s)	751
PsiI	TTATAA	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	790
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PspPI	GGNCC	1 cut(s)	751
PspPPI	RGGWCCY	1 cut(s)	751
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	2 cut(s)	356, 513
RsaNI	GTAC	2 cut(s)	355, 512
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	158, 171, 774
SatI	GCNGC	5 cut(s)	23, 33, 45, 260, 375
Sau3AI	GATC	3 cut(s)	142, 280, 706
Sau96I	GGNCC	1 cut(s)	751
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	2 cut(s)	622, 788
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	3 cut(s)	406, 475, 486
SfaNI	GCATC	2 cut(s)	253, 583
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	751
SmlI	CTYRAG	3 cut(s)	192, 485, 710
SmoI	CTYRAG	3 cut(s)	192, 485, 710
Sse9I	AATT	4 cut(s)	27, 432, 621, 635
SseBI	AGGCCT	1 cut(s)	852
SsiI	CCGC	2 cut(s)	32, 259
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	3 cut(s)	122, 399, 617
SstI	GAGCTC	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	852
StyD4I	CCNGG	1 cut(s)	665
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	269, 527
TaiI	ACGT	2 cut(s)	370, 793
TaqI	TCGA	3 cut(s)	75, 370, 603
TasI	AATT	4 cut(s)	27, 432, 621, 635
TatI	WGTACW	2 cut(s)	354, 511
TauI	GCSGC	2 cut(s)	35, 262
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	158, 171, 774
Tru9I	TTAA	3 cut(s)	158, 171, 774
TseI	GCWGC	3 cut(s)	22, 44, 374
TspGWI	ACGGA	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	769
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	621, 635
XceI	RCATGY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	782
XspI	CTAG	3 cut(s)	122, 399, 617
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.