Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Reverse (-)

64700736 .. 64702317

Gene Structure 1582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG464600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAATGTTTGCTGTGCATCATCTTGGTGTGCTATCTCTTTGTTTGCCTTCTGTGAATGGGTGTACACAGTTTTTGATATTTATCTATGCCTGAAACAGAGCAATCATATAGTGGCACTTAAAGTCCTCTTCAAGAGCCAGTTGCAACAGTCTCAGGTTGAACATCAGCTTCGCCGGGAAGTTGAAATACAAAGTCATCTTCGCCATCCCAATATTTTACGCCTTTACGGCTACTTTTATGATCAGAAACGAGTTTATTTGATATTGGAATATGCAGCCAAAGGTGAACTATACAAGGAACTCCAGCGGTGTAAATACTTTAGTGAAAGACGTGCTGCTACTTATGTTGCATCATTGGCCCGAGCCCTTATATACTGTCATGGAAAGCACGTAATTCACAGAGATATCAAACCCGAAAACCTTCTTATTGGTCAACAGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTGCATACATTCAACCGCAGGCGGACCATGTGTGGCACTCTTGATTACCTCCCTCCTGAGATGGTGGAGAGTGTAGAGCATGATGCTAGTGTGGACATCTGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTTTATGGAGTCCCTCCATTTGAGGCCAAGGAGCATTCAGACACATATAGAAGGATTGTTCAAGTGGATCTGAAGTTCCCTCCTAAACCAATTGTCTCATCTGCTGCAAAGGACCTTATAAGTCAGATGCTTGTCAAGGATTCTTCTCACCGCCTGCCATTACACAAGCTCCTTGAACATCCTTGGATTGTTCAGAACGCGGAGCCATCTGGCGTTTATAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

275

Amino Acids

32.07

Weight (kDa)

8.48

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	27 - 263	1.6e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	32 - 259	4.9e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	719, 819
AccII	CGCG	1 cut(s)	800
AciI	CCGC	5 cut(s)	307, 487, 493, 751, 800
AclWI	GGATC	1 cut(s)	675
AcuI	CTGAAG	1 cut(s)	692
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	6 cut(s)	133, 161, 185, 484, 662, 776
AjiI	CACGTC	1 cut(s)	332
AloI	GAACNNNNNNTCC	2 cut(s)	659, 691
AluBI	AGCT	2 cut(s)	169, 769
AluI	AGCT	2 cut(s)	169, 769
Alw26I	GTCTC	2 cut(s)	156, 700
AlwI	GGATC	1 cut(s)	675
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	2 cut(s)	357, 624
ApeKI	GCWGC	3 cut(s)	275, 335, 704
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	358, 495, 712
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	296, 452, 740
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	2 cut(s)	495, 712
BanII	GRGCYC	1 cut(s)	367
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BbvI	GCAGC	3 cut(s)	287, 322, 691
BccI	CCATC	3 cut(s)	213, 526, 814
BceAI	ACGGC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	156, 700
BfaI	CTAG	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	822
BisI	GCNGC	3 cut(s)	276, 336, 705
BlsI	GCNGC	3 cut(s)	277, 337, 706
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	495, 712
BmeT110I	CYCGRG	1 cut(s)	360
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	358, 495, 712
BmiI	GGNNCC	2 cut(s)	575, 804
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	4 cut(s)	26, 359, 544, 717
BpmI	CTGGAG	2 cut(s)	287, 592
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	577, 627, 782
BsaXI	ACNNNNNCTCC	4 cut(s)	565, 595, 753, 783
Bse1I	ACTGG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	577, 627, 782
BseGI	GGATG	2 cut(s)	205, 778
BseJI	GATNNNNATC	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	167, 519
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	287, 322, 691
Bsh1236I	CGCG	1 cut(s)	800
BshFI	GGCC	2 cut(s)	359, 626
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	2 cut(s)	156, 700
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	359, 626
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	241, 667, 822
BspACI	CCGC	5 cut(s)	307, 487, 493, 751, 800
BspANI	GGCC	2 cut(s)	359, 626
BspCNI	CTCAG	2 cut(s)	166, 520
BspFNI	CGCG	1 cut(s)	800
BspLI	GGNNCC	2 cut(s)	575, 804
BspPI	GGATC	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	577, 627, 782
BssMI	GATC	3 cut(s)	241, 667, 822
BssT1I	CCWWGG	3 cut(s)	577, 627, 782
Bst4CI	ACNGT	3 cut(s)	70, 150, 377
Bst6I	CTCTTC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	491, 755
BstDEI	CTNAG	2 cut(s)	153, 528
BstF5I	GGATG	2 cut(s)	205, 778
BstFNI	CGCG	1 cut(s)	800
BstKTI	GATC	3 cut(s)	244, 670, 825
BstMAI	GTCTC	2 cut(s)	156, 700
BstMBI	GATC	3 cut(s)	241, 667, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 356
BstSCI	CCNGG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	800
BstV1I	GCAGC	3 cut(s)	287, 322, 691
BstX2I	RGATCY	2 cut(s)	667, 822
BstYI	RGATCY	2 cut(s)	667, 822
BsuRI	GGCC	2 cut(s)	359, 626
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	205, 778
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	491, 755
Cfr13I	GGNCC	3 cut(s)	358, 495, 712
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	3 cut(s)	380, 499, 551
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	153, 528
DpnI	GATC	3 cut(s)	243, 669, 824
DpnII	GATC	3 cut(s)	241, 667, 822
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	508
Eco130I	CCWWGG	3 cut(s)	577, 627, 782
Eco24I	GRGCYC	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	495, 712
Eco57I	CTGAAG	1 cut(s)	692
Eco88I	CYCGRG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	3 cut(s)	577, 627, 782
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	3 cut(s)	577, 627, 782
FaeI	CATG	3 cut(s)	383, 502, 554
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	379, 498, 550
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	276, 336, 705
FokI	GGATG	2 cut(s)	192, 765
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	3 cut(s)	276, 336, 705
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	3 cut(s)	276, 336, 705
GsuI	CTGGAG	2 cut(s)	287, 592
HaeIII	GGCC	2 cut(s)	359, 626
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	3 cut(s)	383, 502, 554
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HinfI	GANTC	2 cut(s)	609, 740
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	3 cut(s)	296, 452, 740
Hpy166II	GTNNAC	6 cut(s)	64, 66, 287, 434, 443, 565
Hpy188I	TCNGA	5 cut(s)	246, 640, 672, 726, 795
Hpy188III	TCNNGA	5 cut(s)	133, 448, 512, 527, 571
Hpy8I	GTNNAC	6 cut(s)	64, 66, 287, 434, 443, 565
HpyAV	CCTTC	3 cut(s)	58, 431, 645
HpyCH4III	ACNGT	3 cut(s)	70, 150, 377
HpyCH4IV	ACGT	2 cut(s)	331, 390
HpyCH4V	TGCA	6 cut(s)	17, 145, 275, 350, 475, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 356
HpyF3I	CTNAG	2 cut(s)	153, 528
HpySE526I	ACGT	2 cut(s)	331, 390
Hsp92II	CATG	3 cut(s)	383, 502, 554
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	241, 667, 822
LmnI	GCTCC	4 cut(s)	573, 631, 774, 802
Lsp1109I	GCAGC	3 cut(s)	287, 322, 691
LweI	GCATC	4 cut(s)	26, 359, 544, 717
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	331, 390
MalI	GATC	3 cut(s)	243, 669, 824
MboI	GATC	3 cut(s)	241, 667, 822
MboII	GAAGA	3 cut(s)	121, 191, 735
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	2 cut(s)	667, 822
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	393, 690
MlyI	GAGTC	1 cut(s)	618
MnlI	CCTC	6 cut(s)	137, 530, 534, 616, 624, 690
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	634
MvnI	CGCG	1 cut(s)	800
MwoI	GCNNNNNNNGC	2 cut(s)	228, 356
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	241, 667, 822
NlaIII	CATG	3 cut(s)	383, 502, 554
NlaIV	GGNNCC	2 cut(s)	575, 804
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	740
PkrI	GCNGC	3 cut(s)	277, 337, 706
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
Ppu21I	YACGTR	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	712
PsiI	TTATAA	2 cut(s)	719, 819
Psp5II	RGGWCCY	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	575, 804
PspPI	GGNCC	3 cut(s)	358, 495, 712
PspPPI	RGGWCCY	1 cut(s)	712
PsuI	RGATCY	2 cut(s)	667, 822
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	276, 336, 705
Sau3AI	GATC	3 cut(s)	241, 667, 822
Sau96I	GGNCC	3 cut(s)	358, 495, 712
SchI	GAGTC	1 cut(s)	618
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	9 cut(s)	159, 171, 286, 334, 393, 423, 522, 717, 771
SfaNI	GCATC	4 cut(s)	26, 359, 544, 717
SinI	GGWCC	2 cut(s)	495, 712
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	393, 690
SsiI	CCGC	5 cut(s)	307, 487, 493, 751, 800
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	3 cut(s)	577, 627, 782
TaaI	ACNGT	3 cut(s)	70, 150, 377
TaiI	ACGT	2 cut(s)	334, 393
TasI	AATT	2 cut(s)	393, 690
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	477
TseI	GCWGC	3 cut(s)	275, 335, 704
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	2 cut(s)	495, 712
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.