Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Forward (+)

6217856 .. 6220331

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1089300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGATTGCTGCTGAGAACCAGGCCCCCCAAGAGAAGGCTTCTTCGGAGGTTTCAGCGACGGAGACAAGAAGATGGACGCTCAATGACTTCGACATCGGAAAGCCTCTCGGACGAGGAAAGTTTGGTCACGTCTATTTGGCAAGAGAGAAAAGGAGCAATCACATTGTGGCACTTAAAGTCCTCTTCAAGAGCCAGCTGCAACAGTCTCAGGTTGAACATCAGCTTCGTCGCGAAGTTGAAATACAAAGTCATCTCCGACATCCCAATATCCTACGCCTCTATGGCTACTTTTACGATCAGAAACGAGTTTATTTGATATTAGAATATGCTGCCAAAGGTGAACTATACAAGGAACTACAGAAGTGTAAATACTTCAGCGAAAGGCGTGCTGCCACTTATGTTGTATCATTAGCCAGGGCCCTTATATACTGCCATGGAAAGCACGTAATTCATAGAGATATCAAACCAGAAAACCTCCTAATTGGTGCTCAGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTACACACATTCAACCGCAGGCGGACCATGTGTGGCACCCTTGATTACCTCCCTCCAGAAATGGTGGAGAGTGTAGAGCATGATGCTAGTGTGGATATCTGGAGCCTTGGCGTCCTCTGCTATGAGTTCCTATACGGAGTCCCACCTTTCGAGGCCAAGGAGCATTCGGACACATATAGAAGGATTGTACAAGTGGACCTGAAGTTTCCTCCTAAACCAATTGTCTCTGCTCAGGCAAAGGACCTCATTAGTCAGATGCTTGTCAAGGATTCTGCTGAACGCCTGCCGTTACACAAGCTTCTTGAACATCCATGGATTGTTCAGAATGCTGAGCCCTCTGGCGTATATAGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

295

Amino Acids

34.03

Weight (kDa)

8.98

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	32 - 282	2.8e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 278	2.2e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	563
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	544, 550
AcuI	CTGAAG	2 cut(s)	361, 749
AcyI	GRCGYC	1 cut(s)	639
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	531, 717
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	5 cut(s)	190, 218, 242, 541, 833
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	21, 416
AluBI	AGCT	3 cut(s)	199, 226, 826
AluI	AGCT	3 cut(s)	199, 226, 826
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	3 cut(s)	59, 213, 757
AoxI	GGCC	3 cut(s)	24, 420, 681
ApaI	GGGCCC	1 cut(s)	424
ApeKI	GCWGC	4 cut(s)	11, 199, 332, 392
AspS9I	GGNCC	6 cut(s)	25, 420, 421, 552, 724, 769
AsuHPI	GGTGA	2 cut(s)	353, 509
AvaII	GGWCC	3 cut(s)	552, 724, 769
BaeGI	GKGCMC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	563
BanII	GRGCYC	2 cut(s)	424, 864
BarI	GAAGNNNNNNTAC	4 cut(s)	228, 260, 356, 388
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	186, 319, 379
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	799
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	2 cut(s)	23, 418
BcoDI	GTCTC	3 cut(s)	59, 213, 757
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	359
BglI	GCCNNNNNGGC	1 cut(s)	285
BisI	GCNGC	4 cut(s)	12, 200, 333, 393
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	4 cut(s)	13, 201, 334, 394
Bme1390I	CCNGG	2 cut(s)	23, 418
Bme18I	GGWCC	3 cut(s)	552, 724, 769
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	6 cut(s)	25, 420, 421, 552, 724, 769
BmiI	GGNNCC	4 cut(s)	27, 422, 565, 632
BmrFI	CCNGG	2 cut(s)	23, 418
BmsI	GCATC	2 cut(s)	601, 774
BpmI	CTGGAG	2 cut(s)	567, 649
Bpu10I	CCTNAGC	2 cut(s)	492, 759
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	5 cut(s)	417, 436, 634, 684, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	23, 418
BseDI	CCNNGG	5 cut(s)	417, 436, 634, 684, 839
BseGI	GGATG	2 cut(s)	262, 835
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	5 cut(s)	6, 224, 506, 773, 849
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	3 cut(s)	186, 319, 379
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	26, 422, 683
BshNI	GGYRCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	3 cut(s)	59, 213, 757
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	2 cut(s)	691, 859
BsnI	GGCC	3 cut(s)	26, 422, 683
Bsp120I	GGGCCC	1 cut(s)	420
Bsp1286I	GDGCHC	3 cut(s)	424, 493, 864
Bsp1407I	TGTACA	1 cut(s)	715
Bsp143I	GATC	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	858
Bsp19I	CCATGG	2 cut(s)	436, 839
Bsp68I	TCGCGA	1 cut(s)	234
BspACI	CCGC	2 cut(s)	544, 550
BspANI	GGCC	3 cut(s)	26, 422, 683
BspCNI	CTCAG	5 cut(s)	7, 223, 505, 772, 850
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	27, 422, 565, 632
BspT107I	GGYRCC	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	715
BssECI	CCNNGG	5 cut(s)	417, 436, 634, 684, 839
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	639
BssT1I	CCWWGG	4 cut(s)	436, 634, 684, 839
Bst2UI	CCWGG	2 cut(s)	23, 418
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	639
BstAUI	TGTACA	1 cut(s)	715
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	4 cut(s)	197, 390, 548, 812
BstDEI	CTNAG	5 cut(s)	15, 210, 492, 759, 858
BstDSI	CCRYGG	2 cut(s)	436, 839
BstF5I	GGATG	2 cut(s)	262, 835
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	3 cut(s)	59, 213, 757
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 285, 645
BstNI	CCWGG	2 cut(s)	23, 418
BstSCI	CCNGG	2 cut(s)	21, 416
BstSFI	CTRYAG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	424
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	186, 319, 379
BsuRI	GGCC	3 cut(s)	26, 422, 683
BtgI	CCRYGG	2 cut(s)	436, 839
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	262, 835
BtuMI	TCGCGA	1 cut(s)	234
Cac8I	GCNNGC	4 cut(s)	197, 390, 548, 812
Cfr13I	GGNCC	6 cut(s)	25, 420, 421, 552, 724, 769
CseI	GACGC	2 cut(s)	88, 628
Csp6I	GTAC	2 cut(s)	530, 716
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	4 cut(s)	437, 556, 608, 840
CviQI	GTAC	2 cut(s)	530, 716
DdeI	CTNAG	5 cut(s)	15, 210, 492, 759, 858
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraIII	CACNNNGTG	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	565
Eco130I	CCWWGG	4 cut(s)	436, 634, 684, 839
Eco24I	GRGCYC	2 cut(s)	424, 864
Eco32I	GATATC	2 cut(s)	463, 625
Eco47I	GGWCC	3 cut(s)	552, 724, 769
Eco57I	CTGAAG	2 cut(s)	361, 749
EcoO109I	RGGNCCY	4 cut(s)	25, 420, 421, 769
EcoRII	CCWGG	2 cut(s)	21, 416
EcoRV	GATATC	2 cut(s)	463, 625
EcoT14I	CCWWGG	4 cut(s)	436, 634, 684, 839
EcoT38I	GRGCYC	2 cut(s)	424, 864
ErhI	CCWWGG	4 cut(s)	436, 634, 684, 839
FaeI	CATG	4 cut(s)	440, 559, 611, 843
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	4 cut(s)	436, 555, 607, 839
Fnu4HI	GCNGC	4 cut(s)	12, 200, 333, 393
FokI	GGATG	2 cut(s)	249, 822
FriOI	GRGCYC	2 cut(s)	424, 864
Fsp4HI	GCNGC	4 cut(s)	12, 200, 333, 393
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	4 cut(s)	12, 200, 333, 393
GsuI	CTGGAG	2 cut(s)	567, 649
HaeIII	GGCC	3 cut(s)	26, 422, 683
HgaI	GACGC	2 cut(s)	88, 628
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	4 cut(s)	440, 559, 611, 843
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	2 cut(s)	666, 797
HphI	GGTGA	2 cut(s)	353, 509
Hpy166II	GTNNAC	4 cut(s)	344, 500, 532, 724
Hpy188I	TCNGA	8 cut(s)	49, 101, 113, 260, 303, 697, 783, 852
Hpy188III	TCNNGA	6 cut(s)	190, 233, 505, 584, 628, 830
Hpy8I	GTNNAC	4 cut(s)	344, 500, 532, 724
Hpy99I	CGWCG	2 cut(s)	64, 234
HpyAV	CCTTC	2 cut(s)	31, 702
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	2 cut(s)	132, 447
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 285, 645
HpyF3I	CTNAG	5 cut(s)	15, 210, 492, 759, 858
HpySE526I	ACGT	2 cut(s)	132, 447
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	4 cut(s)	440, 559, 611, 843
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	156, 630, 688
Lsp1109I	GCAGC	3 cut(s)	186, 319, 379
LweI	GCATC	2 cut(s)	601, 774
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	2 cut(s)	132, 447
MaeIII	GTNAC	2 cut(s)	128, 816
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	36, 84, 178
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	3 cut(s)	424, 493, 864
MluCI	AATT	3 cut(s)	450, 483, 747
MlyI	GAGTC	1 cut(s)	675
MmeI	TCCRAC	1 cut(s)	283
MseI	TTAA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	199
MspR9I	CCNGG	2 cut(s)	23, 418
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	2 cut(s)	691, 859
MvaI	CCWGG	2 cut(s)	23, 418
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	11, 285, 645
NcoI	CCATGG	2 cut(s)	436, 839
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	4 cut(s)	440, 559, 611, 843
NlaIV	GGNNCC	4 cut(s)	27, 422, 565, 632
NmuCI	GTSAC	1 cut(s)	128
NruI	TCGCGA	1 cut(s)	234
PctI	GAATGC	2 cut(s)	691, 859
PfeI	GAWTC	1 cut(s)	797
PkrI	GCNGC	4 cut(s)	13, 201, 334, 394
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
Ppu21I	YACGTR	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	769
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	21, 416
PspGI	CCWGG	2 cut(s)	21, 416
PspN4I	GGNNCC	4 cut(s)	27, 422, 565, 632
PspOMI	GGGCCC	1 cut(s)	420
PspPI	GGNCC	6 cut(s)	25, 420, 421, 552, 724, 769
PspPPI	RGGWCCY	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	234
RsaI	GTAC	2 cut(s)	531, 717
RsaNI	GTAC	2 cut(s)	530, 716
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	4 cut(s)	12, 200, 333, 393
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	6 cut(s)	25, 420, 421, 552, 724, 769
SchI	GAGTC	1 cut(s)	675
ScrFI	CCNGG	2 cut(s)	23, 418
SduI	GDGCHC	3 cut(s)	424, 493, 864
SfaNI	GCATC	2 cut(s)	601, 774
SfcI	CTRYAG	1 cut(s)	359
SinI	GGWCC	3 cut(s)	552, 724, 769
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	450, 483, 747
SsiI	CCGC	2 cut(s)	544, 550
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	21, 416
StyI	CCWWGG	4 cut(s)	436, 634, 684, 839
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	2 cut(s)	135, 450
TaqI	TCGA	2 cut(s)	93, 678
TasI	AATT	3 cut(s)	450, 483, 747
TatI	WGTACW	2 cut(s)	529, 715
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	4 cut(s)	11, 199, 332, 392
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	2 cut(s)	77, 678
VpaK11BI	GGWCC	3 cut(s)	552, 724, 769
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.