Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Forward (+)

37624915 .. 37627881

Gene Structure 2967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G443900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAATCGCTGCTGAGAACCAAGCCCAAGAGAAGGCTTCTTCGGAGGTTTCAGCGACGGAGACAAGAAGATGGACGCTCAATGACTTCGACATTGGAAAGCCTCTTGGCCGAGGAAAGTTTGGTCACGTCTATTTGGCAAGAGAGAAACGGAGCAATCACATTGTGGCACTTAAAGTCCTCTTTAAGAGCCAGCTGCAACAGTCTCAGGTTGAACATCAGCTTCGTCGGGAAGTTGAAATACAAAGTCATCTTCGACATCCCAATATCTTACGCCTTTATGGGTACTTTTACGATCAGAAACGAGTTTATTTGATTTTAGAATATGCTGCCAAAGGTGAACTATACAAGGAACTTCAGAAGTGTAAATACTTCAGTGAAAGACGTGCTGCCACTTATGTTGCATCGTTGGCACGGGCCCTTATATACTGCCATGGAAAGCATGTAATTCACAGAGATATCAAGCCAGAGAACCTTCTAATTGGTGCACAGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTGCATACATTCAACCGCAGGCGGACCATGTGTGGTACCCTTGATTACCTCCCTCCTGAGATGGTGGAGAGCGTAGAGCATGATGCTAGTGTGGATATATGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTCTATGGAGTCCCGCCTTTTGAGGCCAAGGAGCATTCAGATACATATAGAAGGATTGTTCAAGTGGATCTAAAGTTTCCTCCTAAACCAATTGTCTCTTCTCATGCAAAGGACCTTATTAGTCAGATGCTTGTGAAGGACTCTTCTCAACGCCTGCCATTGCACAAGCTTCTAGAACATCCATGGATTGTTCAGAACGCGGAGCCCTCTGGCGTATATAGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

33.94

Weight (kDa)

9.09

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	560
AccII	CGCG	1 cut(s)	854
AciI	CCGC	4 cut(s)	541, 547, 668, 854
AclWI	GGATC	1 cut(s)	729
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	2 cut(s)	341, 358
AdeI	CACNNNGTG	2 cut(s)	166, 494
AfaI	GTAC	2 cut(s)	287, 562
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	215, 239, 538, 716
AjiI	CACGTC	2 cut(s)	130, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	736, 768
AluBI	AGCT	3 cut(s)	196, 223, 823
AluI	AGCT	3 cut(s)	196, 223, 823
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	3 cut(s)	56, 210, 754
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	729
AoxI	GGCC	3 cut(s)	109, 417, 678
ApaI	GGGCCC	1 cut(s)	421
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	4 cut(s)	11, 196, 329, 389
Asp718I	GGTACC	1 cut(s)	560
AspS9I	GGNCC	4 cut(s)	417, 418, 549, 766
AsuHPI	GGTGA	2 cut(s)	350, 506
AvaII	GGWCC	2 cut(s)	549, 766
BaeGI	GKGCMC	2 cut(s)	421, 490
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	421, 861
BarI	GAAGNNNNNNTAC	4 cut(s)	225, 257, 353, 385
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	183, 316, 376
BccI	CCATC	2 cut(s)	66, 580
BcoDI	GTCTC	3 cut(s)	56, 210, 754
BfaI	CTAG	2 cut(s)	612, 827
BisI	GCNGC	4 cut(s)	12, 197, 330, 390
BlsI	GCNGC	4 cut(s)	13, 198, 331, 391
Bme18I	GGWCC	2 cut(s)	549, 766
BmgBI	CACGTC	2 cut(s)	130, 386
BmgT120I	GGNCC	4 cut(s)	417, 418, 549, 766
BmiI	GGNNCC	4 cut(s)	419, 562, 629, 858
BmsI	GCATC	3 cut(s)	413, 598, 771
BpuEI	CTTGAG	1 cut(s)	485
BsaJI	CCNNGG	5 cut(s)	112, 433, 631, 681, 836
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	812
BseDI	CCNNGG	5 cut(s)	112, 433, 631, 681, 836
BseGI	GGATG	2 cut(s)	259, 832
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	3 cut(s)	6, 221, 573
BseSI	GKGCMC	2 cut(s)	421, 490
BseXI	GCAGC	3 cut(s)	183, 316, 376
Bsh1236I	CGCG	1 cut(s)	854
BshFI	GGCC	3 cut(s)	111, 419, 680
BshNI	GGYRCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	3 cut(s)	56, 210, 754
BsmFI	GGGAC	1 cut(s)	650
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	111, 419, 680
Bsp120I	GGGCCC	1 cut(s)	417
Bsp1286I	GDGCHC	3 cut(s)	421, 490, 861
Bsp143I	GATC	2 cut(s)	295, 721
Bsp19I	CCATGG	2 cut(s)	433, 836
BspACI	CCGC	4 cut(s)	541, 547, 668, 854
BspANI	GGCC	3 cut(s)	111, 419, 680
BspCNI	CTCAG	3 cut(s)	7, 220, 574
BspFNI	CGCG	1 cut(s)	854
BspLI	GGNNCC	4 cut(s)	419, 562, 629, 858
BspPI	GGATC	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	812
BssECI	CCNNGG	5 cut(s)	112, 433, 631, 681, 836
BssMI	GATC	2 cut(s)	295, 721
BssT1I	CCWWGG	4 cut(s)	433, 631, 681, 836
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	757, 802
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	194, 545, 809
BstDEI	CTNAG	3 cut(s)	15, 207, 582
BstDSI	CCRYGG	2 cut(s)	433, 836
BstF5I	GGATG	2 cut(s)	259, 832
BstFNI	CGCG	1 cut(s)	854
BstKTI	GATC	2 cut(s)	298, 724
BstMAI	GTCTC	3 cut(s)	56, 210, 754
BstMBI	GATC	2 cut(s)	295, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 410
BstNSI	RCATGY	1 cut(s)	446
BstSLI	GKGCMC	2 cut(s)	421, 490
BstUI	CGCG	1 cut(s)	854
BstV1I	GCAGC	3 cut(s)	183, 316, 376
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	111, 419, 680
BtgI	CCRYGG	2 cut(s)	433, 836
BtrI	CACGTC	2 cut(s)	130, 386
BtsCI	GGATG	2 cut(s)	259, 832
BtsIMutI	CAGTG	2 cut(s)	382, 531
Cac8I	GCNNGC	3 cut(s)	194, 545, 809
Cfr13I	GGNCC	4 cut(s)	417, 418, 549, 766
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	286, 561
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	6 cut(s)	434, 443, 553, 605, 758, 837
CviQI	GTAC	2 cut(s)	286, 561
DdeI	CTNAG	3 cut(s)	15, 207, 582
DpnI	GATC	2 cut(s)	297, 723
DpnII	GATC	2 cut(s)	295, 721
DraIII	CACNNNGTG	2 cut(s)	166, 494
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	757, 802
EarI	CTCTTC	2 cut(s)	757, 802
EciI	GGCGGA	1 cut(s)	562
Eco130I	CCWWGG	4 cut(s)	433, 631, 681, 836
Eco24I	GRGCYC	2 cut(s)	421, 861
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	549, 766
Eco57I	CTGAAG	2 cut(s)	341, 358
EcoO109I	RGGNCCY	2 cut(s)	418, 766
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	4 cut(s)	433, 631, 681, 836
EcoT38I	GRGCYC	2 cut(s)	421, 861
ErhI	CCWWGG	4 cut(s)	433, 631, 681, 836
FaeI	CATG	6 cut(s)	437, 446, 556, 608, 761, 840
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	6 cut(s)	433, 442, 552, 604, 757, 836
FauI	CCCGC	1 cut(s)	675
Fnu4HI	GCNGC	4 cut(s)	12, 197, 330, 390
FokI	GGATG	2 cut(s)	246, 819
FriOI	GRGCYC	2 cut(s)	421, 861
Fsp4HI	GCNGC	4 cut(s)	12, 197, 330, 390
FspBI	CTAG	2 cut(s)	612, 827
GluI	GCNGC	4 cut(s)	12, 197, 330, 390
HaeIII	GGCC	3 cut(s)	111, 419, 680
HgaI	GACGC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	437, 446, 556, 608, 761, 840
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	2 cut(s)	663, 794
HphI	GGTGA	2 cut(s)	350, 506
Hpy166II	GTNNAC	3 cut(s)	341, 488, 497
Hpy188I	TCNGA	6 cut(s)	46, 300, 360, 694, 780, 849
Hpy188III	TCNNGA	4 cut(s)	230, 502, 581, 827
Hpy8I	GTNNAC	3 cut(s)	341, 488, 497
Hpy99I	CGWCG	2 cut(s)	61, 231
HpyAV	CCTTC	4 cut(s)	28, 485, 699, 784
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	2 cut(s)	129, 385
HpyCH4V	TGCA	6 cut(s)	199, 404, 488, 529, 761, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 410
HpyF3I	CTNAG	3 cut(s)	15, 207, 582
HpySE526I	ACGT	2 cut(s)	129, 385
Hsp92II	CATG	6 cut(s)	437, 446, 556, 608, 761, 840
KpnI	GGTACC	1 cut(s)	564
Kzo9I	GATC	2 cut(s)	295, 721
LmnI	GCTCC	4 cut(s)	153, 627, 685, 856
LpnPI	CCDG	9 cut(s)	194, 206, 476, 480, 529, 594, 653, 821, 849
Lsp1109I	GCAGC	3 cut(s)	183, 316, 376
LweI	GCATC	3 cut(s)	413, 598, 771
MaeI	CTAG	2 cut(s)	612, 827
MaeII	ACGT	2 cut(s)	129, 385
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	2 cut(s)	297, 723
MboI	GATC	2 cut(s)	295, 721
MboII	GAAGA	5 cut(s)	33, 81, 245, 744, 789
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	3 cut(s)	421, 490, 861
MluCI	AATT	3 cut(s)	447, 480, 744
MlyI	GAGTC	2 cut(s)	672, 788
MnlI	CCTC	9 cut(s)	40, 107, 114, 191, 584, 588, 670, 744, 871
MseI	TTAA	2 cut(s)	174, 186
MspA1I	CMGCKG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	688
MvnI	CGCG	1 cut(s)	854
MwoI	GCNNNNNNNGC	2 cut(s)	11, 410
NcoI	CCATGG	2 cut(s)	433, 836
NdeII	GATC	2 cut(s)	295, 721
NlaIII	CATG	6 cut(s)	437, 446, 556, 608, 761, 840
NlaIV	GGNNCC	4 cut(s)	419, 562, 629, 858
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	446
PctI	GAATGC	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	13, 198, 331, 391
PleI	GAGTC	2 cut(s)	671, 788
PpsI	GAGTC	2 cut(s)	671, 788
PpuMI	RGGWCCY	1 cut(s)	766
Psp5II	RGGWCCY	1 cut(s)	766
PspN4I	GGNNCC	4 cut(s)	419, 562, 629, 858
PspOMI	GGGCCC	1 cut(s)	417
PspPI	GGNCC	4 cut(s)	417, 418, 549, 766
PspPPI	RGGWCCY	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	287, 562
RsaNI	GTAC	2 cut(s)	286, 561
SaqAI	TTAA	2 cut(s)	174, 186
SatI	GCNGC	4 cut(s)	12, 197, 330, 390
Sau3AI	GATC	2 cut(s)	295, 721
Sau96I	GGNCC	4 cut(s)	417, 418, 549, 766
SchI	GAGTC	2 cut(s)	672, 788
SduI	GDGCHC	3 cut(s)	421, 490, 861
SfaNI	GCATC	3 cut(s)	413, 598, 771
SinI	GGWCC	2 cut(s)	549, 766
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	447, 480, 744
SsiI	CCGC	4 cut(s)	541, 547, 668, 854
SspMI	CTAG	2 cut(s)	612, 827
StyI	CCWWGG	4 cut(s)	433, 631, 681, 836
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	2 cut(s)	132, 388
TaqI	TCGA	2 cut(s)	90, 256
TasI	AATT	3 cut(s)	447, 480, 744
Tru1I	TTAA	2 cut(s)	174, 186
Tru9I	TTAA	2 cut(s)	174, 186
TscAI	CASTG	2 cut(s)	382, 531
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	4 cut(s)	11, 196, 329, 389
Tsp45I	GTSAC	1 cut(s)	125
TspGWI	ACGGA	2 cut(s)	74, 166
TspRI	CASTG	2 cut(s)	382, 531
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	549, 766
XbaI	TCTAGA	1 cut(s)	826
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	2 cut(s)	612, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.