Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Reverse (-)

9649249 .. 9651973

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1109800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGATTGCTGCGGAGAACCAGGCCCCCCAAGAGAAGGCATCTTCGGAGGTTTCGGCGACGGAGACAAGGAGATGGACGCTCAACGACTTCGATATCGGAAAGCCTCTCGGACGAGGAAAGTTTGGTCACGTCTATTTGGCAAGAGAGAAGAGGAGCAATCACATCGTCGCACTCAAAGTCCTCTTTAAGAGCCAGCTGCAGCAGTCTCAGGTTGAACATCAGCTTCGTCGTGAGGTTGAGATACAAAGTCATCTTCGACATCCCAATATCCTACGCCTCTACGGCTACTTTTACGATCAGAAACGAGTTTATTTGATATTAGAATATGCTGCTAAAGGTGAACTGTATAAGGAACTACAGAAGTGTAAATACTTCAGTGAAAGACGTGCTGCCACTTATGTTGCATCATTGGCCCGCGCCCTTATATACTGCCATGGAAAGCACGTAATTCATAGAGATATCAAACCAGAAAACCTACTCATTGGTGCACAGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTGCACACATTCAACCGCAGGCGGACCATGTGCGGCACTCTTGATTACCTCCCTCCTGAGATGGTGGAGAGTGTAGAGCACGATGCTAGTGTGGATATCTGGAGCCTTGGCATCCTGTGCTATGAGTTCCTATACGGAGTCCCACCTTTCGAGGCCAAGGAGCATTCAGACACATATAGAAGGATTGTGCAAGTGGATCTGAAGTTTCCTCCGAAACCAATTGTCTCTGCTCATGCAAAGGACCTCATTAGTCAGATGCTTGTCAAGGATTCTGCTCAACGCCTGCCGTTACACAAGCTTCTTGAACATCCATGGATTGTTCAGAACGCCGAGCCCTCTGGCGTATATAGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

295

Amino Acids

34.02

Weight (kDa)

9.09

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	32 - 282	1.9e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 278	4.6e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	420
AciI	CCGC	5 cut(s)	14, 418, 544, 550, 561
AclWI	GGATC	1 cut(s)	732
AcuI	CTGAAG	2 cut(s)	361, 749
AdeI	CACNNNGTG	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	218, 541, 833
AjiI	CACGTC	2 cut(s)	133, 389
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	3 cut(s)	199, 226, 826
AluI	AGCT	3 cut(s)	199, 226, 826
Alw21I	GWGCWC	3 cut(s)	493, 534, 609
Alw26I	GTCTC	3 cut(s)	59, 213, 757
Alw44I	GTGCAC	2 cut(s)	489, 530
AlwI	GGATC	1 cut(s)	732
AoxI	GGCC	3 cut(s)	24, 414, 681
ApaLI	GTGCAC	2 cut(s)	489, 530
ApeKI	GCWGC	5 cut(s)	11, 199, 202, 332, 392
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	4 cut(s)	25, 415, 552, 769
AsuHPI	GGTGA	2 cut(s)	353, 509
AvaII	GGWCC	2 cut(s)	552, 769
BaeGI	GKGCMC	2 cut(s)	493, 534
BanII	GRGCYC	1 cut(s)	864
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
Bbv12I	GWGCWC	3 cut(s)	493, 534, 609
BbvI	GCAGC	4 cut(s)	186, 214, 319, 379
BccI	CCATC	2 cut(s)	69, 583
BceAI	ACGGC	2 cut(s)	301, 799
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	23
BcoDI	GTCTC	3 cut(s)	59, 213, 757
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	2 cut(s)	200, 359
BglI	GCCNNNNNGGC	1 cut(s)	285
BisI	GCNGC	6 cut(s)	12, 200, 203, 333, 393, 562
BlsI	GCNGC	6 cut(s)	13, 201, 204, 334, 394, 563
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	2 cut(s)	552, 769
BmgBI	CACGTC	2 cut(s)	133, 389
BmgT120I	GGNCC	4 cut(s)	25, 415, 552, 769
BmiI	GGNNCC	2 cut(s)	27, 632
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	5 cut(s)	50, 416, 601, 648, 774
BpmI	CTGGAG	1 cut(s)	649
BpuEI	CTTGAG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	448
BsaJI	CCNNGG	4 cut(s)	436, 634, 684, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	4 cut(s)	436, 634, 684, 839
BseGI	GGATG	3 cut(s)	262, 639, 835
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	224, 576
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	2 cut(s)	493, 534
BseXI	GCAGC	4 cut(s)	186, 214, 319, 379
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	3 cut(s)	26, 416, 683
BsiHKAI	GWGCWC	3 cut(s)	493, 534, 609
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	3 cut(s)	59, 213, 757
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	3 cut(s)	26, 416, 683
Bsp1286I	GDGCHC	4 cut(s)	493, 534, 609, 864
Bsp143I	GATC	2 cut(s)	298, 724
Bsp19I	CCATGG	2 cut(s)	436, 839
BspACI	CCGC	5 cut(s)	14, 418, 544, 550, 561
BspANI	GGCC	3 cut(s)	26, 416, 683
BspCNI	CTCAG	2 cut(s)	223, 577
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	27, 632
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	1 cut(s)	732
BssECI	CCNNGG	4 cut(s)	436, 634, 684, 839
BssMI	GATC	2 cut(s)	298, 724
BssT1I	CCWWGG	4 cut(s)	436, 634, 684, 839
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	4 cut(s)	197, 418, 548, 812
BstDEI	CTNAG	2 cut(s)	210, 585
BstDSI	CCRYGG	2 cut(s)	436, 839
BstF5I	GGATG	3 cut(s)	262, 639, 835
BstFNI	CGCG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	2 cut(s)	301, 727
BstMAI	GTCTC	3 cut(s)	59, 213, 757
BstMBI	GATC	2 cut(s)	298, 724
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 285, 413, 645
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	2 cut(s)	200, 359
BstSLI	GKGCMC	2 cut(s)	493, 534
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	186, 214, 319, 379
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BsuRI	GGCC	3 cut(s)	26, 416, 683
BtgI	CCRYGG	2 cut(s)	436, 839
BtrI	CACGTC	2 cut(s)	133, 389
BtsCI	GGATG	3 cut(s)	262, 639, 835
BtsIMutI	CAGTG	2 cut(s)	385, 534
Cac8I	GCNNGC	4 cut(s)	197, 418, 548, 812
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	4 cut(s)	25, 415, 552, 769
CseI	GACGC	1 cut(s)	88
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	4 cut(s)	437, 556, 761, 840
DdeI	CTNAG	2 cut(s)	210, 585
DpnI	GATC	2 cut(s)	300, 726
DpnII	GATC	2 cut(s)	298, 724
DraIII	CACNNNGTG	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	565
Eco130I	CCWWGG	4 cut(s)	436, 634, 684, 839
Eco24I	GRGCYC	1 cut(s)	864
Eco32I	GATATC	3 cut(s)	97, 463, 625
Eco47I	GGWCC	2 cut(s)	552, 769
Eco57I	CTGAAG	2 cut(s)	361, 749
EcoO109I	RGGNCCY	2 cut(s)	25, 769
EcoRII	CCWGG	1 cut(s)	21
EcoRV	GATATC	3 cut(s)	97, 463, 625
EcoT14I	CCWWGG	4 cut(s)	436, 634, 684, 839
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	4 cut(s)	436, 634, 684, 839
FaeI	CATG	4 cut(s)	440, 559, 764, 843
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	4 cut(s)	436, 555, 760, 839
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	6 cut(s)	12, 200, 203, 333, 393, 562
FokI	GGATG	3 cut(s)	249, 626, 822
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	6 cut(s)	12, 200, 203, 333, 393, 562
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	6 cut(s)	12, 200, 203, 333, 393, 562
GsuI	CTGGAG	1 cut(s)	649
HaeIII	GGCC	3 cut(s)	26, 416, 683
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	440, 559, 764, 843
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	2 cut(s)	666, 797
HphI	GGTGA	2 cut(s)	353, 509
Hpy166II	GTNNAC	4 cut(s)	344, 491, 500, 532
Hpy188I	TCNGA	9 cut(s)	49, 101, 113, 303, 697, 729, 741, 783, 852
Hpy188III	TCNNGA	6 cut(s)	233, 505, 569, 584, 628, 830
Hpy8I	GTNNAC	4 cut(s)	344, 491, 500, 532
Hpy99I	CGWCG	3 cut(s)	64, 173, 234
HpyAV	CCTTC	2 cut(s)	31, 702
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	3 cut(s)	132, 388, 447
HpyCH4V	TGCA	6 cut(s)	202, 407, 491, 532, 718, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 285, 413, 645
HpyF3I	CTNAG	2 cut(s)	210, 585
HpySE526I	ACGT	3 cut(s)	132, 388, 447
Hsp92II	CATG	4 cut(s)	440, 559, 764, 843
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	298, 724
LmnI	GCTCC	3 cut(s)	156, 630, 688
Lsp1109I	GCAGC	4 cut(s)	186, 214, 319, 379
LweI	GCATC	5 cut(s)	50, 416, 601, 648, 774
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	3 cut(s)	132, 388, 447
MaeIII	GTNAC	2 cut(s)	128, 816
MalI	GATC	2 cut(s)	300, 726
MboI	GATC	2 cut(s)	298, 724
MboII	GAAGA	3 cut(s)	36, 163, 248
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	4 cut(s)	493, 534, 609, 864
MluCI	AATT	2 cut(s)	450, 747
MlyI	GAGTC	1 cut(s)	675
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	4 cut(s)	11, 285, 413, 645
NcoI	CCATGG	2 cut(s)	436, 839
NdeII	GATC	2 cut(s)	298, 724
NlaIII	CATG	4 cut(s)	440, 559, 764, 843
NlaIV	GGNNCC	2 cut(s)	27, 632
NmeAIII	GCCGAG	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	128
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	797
PkrI	GCNGC	6 cut(s)	13, 201, 204, 334, 394, 563
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
Ppu21I	YACGTR	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	769
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	27, 632
PspPI	GGNCC	4 cut(s)	25, 415, 552, 769
PspPPI	RGGWCCY	1 cut(s)	769
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	724
PvuII	CAGCTG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	6 cut(s)	12, 200, 203, 333, 393, 562
Sau3AI	GATC	2 cut(s)	298, 724
Sau96I	GGNCC	4 cut(s)	25, 415, 552, 769
SchI	GAGTC	1 cut(s)	675
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	4 cut(s)	493, 534, 609, 864
SfaNI	GCATC	5 cut(s)	50, 416, 601, 648, 774
SfcI	CTRYAG	2 cut(s)	200, 359
SinI	GGWCC	2 cut(s)	552, 769
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	450, 747
SsiI	CCGC	5 cut(s)	14, 418, 544, 550, 561
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	4 cut(s)	436, 634, 684, 839
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	3 cut(s)	135, 391, 450
TaqI	TCGA	3 cut(s)	93, 259, 678
TasI	AATT	2 cut(s)	450, 747
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	385, 534
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	5 cut(s)	11, 199, 202, 332, 392
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	2 cut(s)	77, 678
TspRI	CASTG	2 cut(s)	385, 534
VneI	GTGCAC	2 cut(s)	489, 530
VpaK11BI	GGWCC	2 cut(s)	552, 769
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.