Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Forward (+)

65584213 .. 65586837

Gene Structure 2625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG436200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGATTGCTGCGGAGAACCAGCCCCAGGAGAAGGGTTCATCGGAGGTTTCGGCGACGGAGACGAAAAGGTGGACGCTCAATGACTTCGATATTGGAAAGCCTCTAGGACGAGGGAAGTTTGGTCATGTCTATTTGGCAAGAGAGAAGAGGAGCAATCATATAGTGGCACTTAAAGTCCTCTTCAAGAGCCAGTTGCAACAGTCTCAGGTTGAACATCAGCTTCGCCGGGAAGTTGAAATACAAAGTCATCTTCGCCATCCCAATATTTTACGCCTTTACGGCTACTTTTATGATCAGAAACGAGTTTATTTGATATTGGAATATGCCGCCAAAGGTGAACTATACAAGGAACTCCAGCGGTGTAAATACTTTAGTGAAAGACGTGCTGCTACCTATGTTGCATCATTGGCCCGAGCCCTTATATACTGTCATGGAAAGCACGTAATTCACAGAGATATCAAACCAGAAAACCTTCTCATTGGTCAACAGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTGCATACATTCAACCGCAGGCGGACCATGTGTGGCACTCTTGATTACCTCCCTCCTGAGATGGTGGAGAGTGTAGAGCATGATGCTAGTGTAGACATCTGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTTTATGGAGTCCCTCCATTTGAGGCCAAGGAGCATTCAGACACATATAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

236

Amino Acids

27.53

Weight (kDa)

8.92

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 234	4.6e-65	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	32 - 234	2.4e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	5 cut(s)	14, 330, 361, 541, 547
AfiI	CCNNNNNNNGG	2 cut(s)	28, 34
AgsI	TTSAA	4 cut(s)	187, 215, 239, 538
AjiI	CACGTC	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	56, 210
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	2 cut(s)	411, 678
ApeKI	GCWGC	2 cut(s)	11, 389
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	412, 549
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	350, 506
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	549
BanII	GRGCYC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	225, 257
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	2 cut(s)	267, 580
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	56, 210
BfaI	CTAG	2 cut(s)	107, 612
BglI	GCCNNNNNGGC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	12, 330, 390
BlsI	GCNGC	3 cut(s)	13, 331, 391
Bme1390I	CCNGG	2 cut(s)	29, 230
Bme18I	GGWCC	1 cut(s)	549
BmeT110I	CYCGRG	1 cut(s)	414
BmgBI	CACGTC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	412, 549
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	2 cut(s)	29, 230
BmsI	GCATC	2 cut(s)	413, 598
BpmI	CTGGAG	2 cut(s)	341, 646
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	445
BsaJI	CCNNGG	3 cut(s)	27, 631, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 34
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	27, 631, 681
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	28, 34
BseMII	CTCAG	2 cut(s)	221, 573
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	2 cut(s)	413, 680
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	2 cut(s)	28, 34
BsmAI	GTCTC	2 cut(s)	56, 210
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	650
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	2 cut(s)	413, 680
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	5 cut(s)	14, 330, 361, 541, 547
BspANI	GGCC	2 cut(s)	413, 680
BspCNI	CTCAG	2 cut(s)	220, 574
BspLI	GGNNCC	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	27, 631, 681
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	631, 681
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	204, 431
Bst6I	CTCTTC	2 cut(s)	143, 188
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	2 cut(s)	207, 582
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	56, 210
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 282, 410
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	27, 228
BstV1I	GCAGC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	413, 680
BtrI	CACGTC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	412, 549
CseI	GACGC	1 cut(s)	85
CviAII	CATG	4 cut(s)	128, 434, 553, 605
CviJI	RGCY	9 cut(s)	25, 103, 192, 223, 285, 413, 419, 630, 680
CviKI_1	RGCY	9 cut(s)	25, 103, 192, 223, 285, 413, 419, 630, 680
DdeI	CTNAG	2 cut(s)	207, 582
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	143, 188
EarI	CTCTTC	2 cut(s)	143, 188
EciI	GGCGGA	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	631, 681
Eco24I	GRGCYC	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	631, 681
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	631, 681
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	4 cut(s)	131, 437, 556, 608
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	4 cut(s)	127, 433, 552, 604
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	3 cut(s)	12, 330, 390
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	3 cut(s)	12, 330, 390
FspBI	CTAG	2 cut(s)	107, 612
GluI	GCNGC	3 cut(s)	12, 330, 390
GsuI	CTGGAG	2 cut(s)	341, 646
HaeIII	GGCC	2 cut(s)	413, 680
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	85
Hin1II	CATG	4 cut(s)	131, 437, 556, 608
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	1 cut(s)	663
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	350, 506
Hpy166II	GTNNAC	5 cut(s)	75, 341, 488, 497, 619
Hpy188I	TCNGA	3 cut(s)	46, 300, 694
Hpy188III	TCNNGA	5 cut(s)	187, 502, 566, 581, 625
Hpy8I	GTNNAC	5 cut(s)	75, 341, 488, 497, 619
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	28, 485, 699
HpyCH4III	ACNGT	2 cut(s)	204, 431
HpyCH4IV	ACGT	2 cut(s)	385, 444
HpyCH4V	TGCA	3 cut(s)	199, 404, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 282, 410
HpyF3I	CTNAG	2 cut(s)	207, 582
HpySE526I	ACGT	2 cut(s)	385, 444
Hsp92II	CATG	4 cut(s)	131, 437, 556, 608
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	153, 627, 685
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	413, 598
MaeI	CTAG	2 cut(s)	107, 612
MaeII	ACGT	2 cut(s)	385, 444
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	160, 175, 245
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	672
MnlI	CCTC	9 cut(s)	40, 107, 114, 144, 191, 584, 588, 670, 678
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	29, 230
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	11, 282, 410
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	131, 437, 556, 608
NlaIV	GGNNCC	1 cut(s)	629
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	474
PkrI	GCNGC	3 cut(s)	13, 331, 391
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
Ppu21I	YACGTR	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	2 cut(s)	412, 549
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	3 cut(s)	12, 330, 390
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	412, 549
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	2 cut(s)	29, 230
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	2 cut(s)	413, 598
SinI	GGWCC	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	5 cut(s)	14, 330, 361, 541, 547
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	107, 612
StyD4I	CCNGG	2 cut(s)	27, 228
StyI	CCWWGG	2 cut(s)	631, 681
TaaI	ACNGT	2 cut(s)	204, 431
TaiI	ACGT	2 cut(s)	388, 447
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	447
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	2 cut(s)	11, 389
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	2 cut(s)	107, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.