Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Forward (+)

50164266 .. 50165192

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGAGAGCGGAAGCACTGAACGCGTACAGATCGCTGCTGAGAGCGACTCGGAAATCGTTCGCCGGAGACACCGTGATGCTCAAGGGCTCGGCGGCGGAGGTTCGCCAGAAATTCGAGGAGAATAGGGGCGTGACGTCAGAGGAGGAGATCCAGAGACTGCTTGGCGAGGCACGCGAGGCCTCCAGCTTCATCTCCACCATGATCGTCCAGGCCAAGCTCAACTCCCGCGGCGGCTACGAAGTGAAGGCCGACAAGGACCATGCCGGAGCTACGCTTGAGATTCCTTCTGAAGAAATCCTTCGCAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

104

Amino Acids

11.47

Weight (kDa)

8.03

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_LYR	PF05347	5 - 61	2.1e-12	Complex 1 protein (LYR family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	11
AccII	CGCG	3 cut(s)	26, 177, 231
AciI	CCGC	6 cut(s)	11, 95, 98, 229, 231, 234
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	189, 220, 272
AluI	AGCT	3 cut(s)	189, 220, 272
Alw26I	GTCTC	2 cut(s)	63, 151
AlwI	GGATC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	160
AoxI	GGCC	3 cut(s)	180, 213, 249
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	2 cut(s)	59, 300
AspS9I	GGNCC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	63, 151
BisI	GCNGC	4 cut(s)	38, 96, 232, 235
BlsI	GCNGC	4 cut(s)	39, 97, 233, 236
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	169
BpuEI	CTTGAG	2 cut(s)	68, 299
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	3 cut(s)	134, 158, 161
BseXI	GCAGC	1 cut(s)	24
Bsh1236I	CGCG	3 cut(s)	26, 177, 231
BshFI	GGCC	3 cut(s)	182, 215, 251
BsiSI	CCGG	2 cut(s)	66, 267
BsmAI	GTCTC	2 cut(s)	63, 151
BsnI	GGCC	3 cut(s)	182, 215, 251
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	32, 150, 204
BspACI	CCGC	6 cut(s)	11, 95, 98, 229, 231, 234
BspANI	GGCC	3 cut(s)	182, 215, 251
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	3 cut(s)	26, 177, 231
BspPI	GGATC	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	3 cut(s)	32, 150, 204
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	229
BstFNI	CGCG	3 cut(s)	26, 177, 231
BstKTI	GATC	3 cut(s)	35, 153, 207
BstMAI	GTCTC	2 cut(s)	63, 151
BstMBI	GATC	3 cut(s)	32, 150, 204
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 174, 179
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	3 cut(s)	26, 177, 231
BstV1I	GCAGC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	182, 215, 251
BtgI	CCRYGG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	259
Cfr42I	CCGCGG	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	202, 263
CviJI	RGCY	8 cut(s)	90, 182, 189, 215, 220, 237, 251, 272
CviKI_1	RGCY	8 cut(s)	90, 182, 189, 215, 220, 237, 251, 272
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	3 cut(s)	34, 152, 206
DpnII	GATC	3 cut(s)	32, 150, 204
EciI	GGCGGA	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	2 cut(s)	205, 266
FaiI	YATR	2 cut(s)	203, 264
FalI	AAGNNNNNCTT	1 cut(s)	285
FatI	CATG	2 cut(s)	201, 262
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	4 cut(s)	38, 96, 232, 235
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	4 cut(s)	38, 96, 232, 235
GluI	GCNGC	4 cut(s)	38, 96, 232, 235
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	182, 215, 251
HapII	CCGG	2 cut(s)	66, 267
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	205, 266
HinfI	GANTC	2 cut(s)	49, 283
HpaII	CCGG	2 cut(s)	66, 267
Hpy188I	TCNGA	3 cut(s)	54, 142, 292
Hpy188III	TCNNGA	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	241, 297, 311
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 174, 179
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	205, 266
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	32, 150, 204
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	7 cut(s)	79, 122, 167, 197, 199, 224, 280
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	34, 152, 206
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	3 cut(s)	32, 150, 204
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	1 cut(s)	113
MluI	ACGCGT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	7 cut(s)	94, 112, 136, 139, 163, 172, 193
MroXI	GAANNNNTTC	2 cut(s)	59, 300
MseI	TTAA	1 cut(s)	313
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	66, 267
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	3 cut(s)	26, 177, 231
MwoI	GCNNNNNNNGC	3 cut(s)	23, 174, 179
NdeII	GATC	3 cut(s)	32, 150, 204
NlaIII	CATG	2 cut(s)	205, 266
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	182
PdmI	GAANNNNTTC	2 cut(s)	59, 300
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	39, 97, 233, 236
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	77
SacII	CCGCGG	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	313
SatI	GCNGC	4 cut(s)	38, 96, 232, 235
Sau3AI	GATC	3 cut(s)	32, 150, 204
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	5 cut(s)	105, 140, 191, 222, 274
SfaNI	GCATC	1 cut(s)	69
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	83, 278
SmoI	CTYRAG	2 cut(s)	83, 278
Sse9I	AATT	1 cut(s)	113
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	6 cut(s)	11, 95, 98, 229, 231, 234
StuI	AGGCCT	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	113
TauI	GCSGC	3 cut(s)	98, 234, 237
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmnI	GAANNNNTTC	2 cut(s)	59, 300
ZraI	GACGTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.