Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Forward (+)

4213195 .. 4215510

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGATTGCTGCGGAGAATCAGCCCCAGGAGAAGAGCAATCATATAGTGGCACTTAAAGTCCTCTTCAAGAGCCAGTTGCAACAGTCTCAGGTTGAACATCAGCTTCGCCGGGAAGTTGAAATACAAAGTCATCTTCGCCATCCCAACATTTTACGCCTTTATGGCTACTTTTATGATCAGTATGTGGCATCATTGGCCCGAGCCCTTATATACTGTCATGGAAAGCACGTAATTCACAGAGATATCAAACCGGAAAATCTTCTCATTGGTCAACAGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTGCATACATTCAACCGCAGGCGGACCATGTGTGGCACTCTTGATTACCTCCCTCCTGAGATGGTGGAGAGTGTAGAGCATGATGCTAGTGTGGACATCTGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTTTATGGAGTCCCTCCATTTGAGGCCAAGGAGCATTCAGACACATATAGAAGGATTGTTCAAGTGGATCTGAAGTTCCCTCCTAAACCAATTGTCTCATCCGCTGCAAAGGACCTTATAAGTCAGATGCTTGTCAAGGATTCTTCTCACCGCCTGCCATTACACAAGCTCCTTGAACATCCTTGGATTGTTCAGAACGCGGAGCCATCTGGCGTTTATAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

223

Amino Acids

25.66

Weight (kDa)

7.23

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 62	6.8e-07	Protein kinase domain
Pkinase	PF00069	61 - 210	8.5e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	61 - 206	2.2e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 660
AccII	CGCG	1 cut(s)	641
AciI	CCGC	6 cut(s)	14, 328, 334, 543, 592, 641
AclWI	GGATC	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	533
AgsI	TTSAA	6 cut(s)	70, 98, 122, 325, 503, 617
AjnI	CCWGG	1 cut(s)	27
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AluBI	AGCT	2 cut(s)	106, 610
AluI	AGCT	2 cut(s)	106, 610
Alw26I	GTCTC	2 cut(s)	93, 541
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	198, 465
ApeKI	GCWGC	2 cut(s)	11, 545
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	199, 336, 553
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	293, 581
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	2 cut(s)	336, 553
BanII	GRGCYC	1 cut(s)	208
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	3 cut(s)	150, 367, 655
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	93, 541
BfaI	CTAG	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	12, 546
BlsI	GCNGC	2 cut(s)	13, 547
Bme1390I	CCNGG	2 cut(s)	29, 113
Bme18I	GGWCC	2 cut(s)	336, 553
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	3 cut(s)	199, 336, 553
BmiI	GGNNCC	2 cut(s)	416, 645
BmrFI	CCNGG	2 cut(s)	29, 113
BmsI	GCATC	3 cut(s)	200, 385, 558
BpmI	CTGGAG	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	27, 418, 468, 623
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	4 cut(s)	406, 436, 594, 624
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	27, 418, 468, 623
BseGI	GGATG	3 cut(s)	142, 539, 619
BseMII	CTCAG	2 cut(s)	104, 360
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	2 cut(s)	200, 467
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	112, 254
BslFI	GGGAC	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	93, 541
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	200, 467
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	178, 508
BspACI	CCGC	6 cut(s)	14, 328, 334, 543, 592, 641
BspANI	GGCC	2 cut(s)	200, 467
BspCNI	CTCAG	2 cut(s)	103, 361
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	2 cut(s)	416, 645
BspPI	GGATC	1 cut(s)	516
BspQI	GCTCTTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	4 cut(s)	27, 418, 468, 623
BssMI	GATC	2 cut(s)	178, 508
BssT1I	CCWWGG	3 cut(s)	418, 468, 623
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	87, 218
Bst6I	CTCTTC	2 cut(s)	29, 71
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	332, 596
BstDEI	CTNAG	2 cut(s)	90, 369
BstF5I	GGATG	3 cut(s)	142, 539, 619
BstFNI	CGCG	1 cut(s)	641
BstKTI	GATC	2 cut(s)	181, 511
BstMAI	GTCTC	2 cut(s)	93, 541
BstMBI	GATC	2 cut(s)	178, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 165, 197
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	27, 111
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	200, 467
BtsCI	GGATG	3 cut(s)	142, 539, 619
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	332, 596
Cfr13I	GGNCC	3 cut(s)	199, 336, 553
CviAII	CATG	3 cut(s)	221, 340, 392
DdeI	CTNAG	2 cut(s)	90, 369
DpnI	GATC	2 cut(s)	180, 510
DpnII	GATC	2 cut(s)	178, 508
Eam1104I	CTCTTC	2 cut(s)	29, 71
EarI	CTCTTC	2 cut(s)	29, 71
EciI	GGCGGA	1 cut(s)	349
Eco130I	CCWWGG	3 cut(s)	418, 468, 623
Eco24I	GRGCYC	1 cut(s)	208
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	336, 553
Eco57I	CTGAAG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	3 cut(s)	418, 468, 623
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	3 cut(s)	418, 468, 623
FaeI	CATG	3 cut(s)	224, 343, 395
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	3 cut(s)	220, 339, 391
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	12, 546
FokI	GGATG	3 cut(s)	129, 526, 606
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	12, 546
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	2 cut(s)	12, 546
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	2 cut(s)	200, 467
HapII	CCGG	2 cut(s)	112, 254
Hin1II	CATG	3 cut(s)	224, 343, 395
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HinfI	GANTC	3 cut(s)	19, 450, 581
HpaII	CCGG	2 cut(s)	112, 254
HphI	GGTGA	2 cut(s)	293, 581
Hpy166II	GTNNAC	3 cut(s)	275, 284, 406
Hpy188I	TCNGA	4 cut(s)	481, 513, 567, 636
Hpy188III	TCNNGA	5 cut(s)	70, 289, 353, 368, 412
Hpy8I	GTNNAC	3 cut(s)	275, 284, 406
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	2 cut(s)	87, 218
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	82, 316, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 165, 197
HpyF3I	CTNAG	2 cut(s)	90, 369
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	224, 343, 395
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	178, 508
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	4 cut(s)	414, 472, 615, 643
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	3 cut(s)	200, 385, 558
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	180, 510
MboI	GATC	2 cut(s)	178, 508
MboII	GAAGA	5 cut(s)	46, 58, 128, 254, 576
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	234, 531
MlyI	GAGTC	1 cut(s)	459
MnlI	CCTC	6 cut(s)	74, 371, 375, 457, 465, 531
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	112, 254
MspR9I	CCNGG	2 cut(s)	29, 113
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	3 cut(s)	11, 165, 197
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	178, 508
NlaIII	CATG	3 cut(s)	224, 343, 395
NlaIV	GGNNCC	2 cut(s)	416, 645
PciSI	GCTCTTC	1 cut(s)	29
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	19, 581
PkrI	GCNGC	2 cut(s)	13, 547
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Ppu21I	YACGTR	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	553
PsiI	TTATAA	2 cut(s)	560, 660
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	416, 645
PspPI	GGNCC	3 cut(s)	199, 336, 553
PspPPI	RGGWCCY	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	508
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	12, 546
Sau3AI	GATC	2 cut(s)	178, 508
Sau96I	GGNCC	3 cut(s)	199, 336, 553
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	2 cut(s)	29, 113
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	6 cut(s)	96, 108, 234, 363, 558, 612
SfaNI	GCATC	3 cut(s)	200, 385, 558
SinI	GGWCC	2 cut(s)	336, 553
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	234, 531
SsiI	CCGC	6 cut(s)	14, 328, 334, 543, 592, 641
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	27, 111
StyI	CCWWGG	3 cut(s)	418, 468, 623
TaaI	ACNGT	2 cut(s)	87, 218
TaiI	ACGT	1 cut(s)	234
TasI	AATT	2 cut(s)	234, 531
TfiI	GAWTC	2 cut(s)	19, 581
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	11, 545
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	336, 553
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.