Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010713

Physical Location & Seq

Genomic Coordinates Reverse (-)

64664360 .. 64667260

Gene Structure 2901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG478900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGAGAGGGGATGAGATATGTGCTTTCTTATCAAATGATGTGGAATGTCCTTTTGCAAATTTTAAGTTGGAAATGAATGTTTGCTATGCATCATCTTGGTGCGGTATCTCTTTGTTTGCCTTCTGTGAATGGGTGTACACAGTTTTTGATATTTATCTATGCCTGAAACAGAGCAATCATATAGTGGCACTTAAAGTCCTCTTCAAGAGCCAGTTGCAACAGTCTCAGGTTGAACATCAGCTTCGCCGGGAAGTTGAAATACAAAGTCATCTTCGCCATCCCAATATTTTACGCCTTTACGGCTACTTTTATGATCAGAAACGAGTTTATTTGATATTGGAATATGCCGCCAAAGGTGAACTATACAAGGAACTCCAGCGGTGTAAATACTTTAGTGAAAGACGTGCTGCTACCTATGTTGCATCATTGGCCCGAGCCCTTATATACTGTCATGGAAAGCACGTAATTCACAGAGATATCAAACCAGAAAACCTTCTCATTGGTCAACAGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTGCATACATTCAACCGCAGGCGGACCATGTGTGGCACTCTTGATTACCTCCCTCCTGAGATGGTGGAGAGTGTAGAGCATGATGCTAGTGTAGACATCTGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTTTATGGAGTCCCTCCATTTGAGGCCAAGGAGCATTCAGACACATATAGAAGGATTGTTCAAGTGGATCTGAAGTTCCCTCCTAAACCAATTGTCTCATCTGCTGCAAAGGACCTTATAAGTCAGGTGCTTTTGTCTACTATGATTTGCAGTTTGCACCTAATCAGTTCAAGTACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

285

Amino Acids

33.13

Weight (kDa)

6.82

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	52 - 269	1.7e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	57 - 266	5.8e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25880 AT2G25880 AT2G25880 AT2G25880 AT4G32830
fragaria_vesca	FvH4_2g35180
malus_domestica	MD08G1109800.v1.1 MD15G1089300.v1.1
prunus_persica	Prupe.1G443900_v2.0.a1
pyrus_communis	pycom15g08370
rosa_chinensis	RchiOBHm_Chr6g0306761
rosa_laevigata	RLG00000010767
rosa_multiflora	Rmu_ssc0000380.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161480
rosa_rugosa	Rorug06G0352600
rosa_samantha	Rh6AG464600 Rh6BG436200 Rh6CG478900 Rh6DG466000
rosa_wichuraiana	Rw6G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	639, 812
AciI	CCGC	5 cut(s)	105, 351, 382, 562, 568
AclWI	GGATC	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	767
AfaI	GTAC	2 cut(s)	140, 850
AgsI	TTSAA	6 cut(s)	208, 236, 260, 559, 737, 846
AjiI	CACGTC	1 cut(s)	407
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	231, 775
AlwI	GGATC	1 cut(s)	750
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	2 cut(s)	432, 699
ApeKI	GCWGC	2 cut(s)	410, 779
ApoI	RAATTY	1 cut(s)	61
Asp700I	GAANNNNTTC	1 cut(s)	495
AspS9I	GGNCC	3 cut(s)	433, 570, 787
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	371, 527
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	570, 787
BanII	GRGCYC	1 cut(s)	442
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BbvI	GCAGC	2 cut(s)	397, 766
BccI	CCATC	2 cut(s)	288, 601
BceAI	ACGGC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	231, 775
BfaI	CTAG	1 cut(s)	633
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	351, 411, 780
BlsI	GCNGC	3 cut(s)	352, 412, 781
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	2 cut(s)	570, 787
BmeT110I	CYCGRG	1 cut(s)	435
BmgBI	CACGTC	1 cut(s)	407
BmgT120I	GGNCC	3 cut(s)	433, 570, 787
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	3 cut(s)	101, 434, 619
BpmI	CTGGAG	2 cut(s)	362, 667
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	466
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	652, 702
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	652, 702
BseGI	GGATG	2 cut(s)	19, 280
BseJI	GATNNNNATC	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	242, 594
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	397, 766
BshFI	GGCC	2 cut(s)	434, 701
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	231, 775
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	434, 701
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	316, 742
BspACI	CCGC	5 cut(s)	105, 351, 382, 562, 568
BspANI	GGCC	2 cut(s)	434, 701
BspCNI	CTCAG	2 cut(s)	241, 595
BspLI	GGNNCC	1 cut(s)	650
BspPI	GGATC	1 cut(s)	750
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	652, 702
BssMI	GATC	2 cut(s)	316, 742
BssT1I	CCWWGG	2 cut(s)	652, 702
Bst4CI	ACNGT	3 cut(s)	145, 225, 452
Bst6I	CTCTTC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	2 cut(s)	228, 603
BstF5I	GGATG	2 cut(s)	19, 280
BstKTI	GATC	2 cut(s)	319, 745
BstMAI	GTCTC	2 cut(s)	231, 775
BstMBI	GATC	2 cut(s)	316, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 431
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	397, 766
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	434, 701
BtrI	CACGTC	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	19, 280
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	566
Cfr13I	GGNCC	3 cut(s)	433, 570, 787
Csp6I	GTAC	2 cut(s)	139, 849
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	3 cut(s)	455, 574, 626
CviJI	RGCY	7 cut(s)	213, 244, 306, 434, 440, 651, 701
CviKI_1	RGCY	7 cut(s)	213, 244, 306, 434, 440, 651, 701
CviQI	GTAC	2 cut(s)	139, 849
DdeI	CTNAG	2 cut(s)	228, 603
DpnI	GATC	2 cut(s)	318, 744
DpnII	GATC	2 cut(s)	316, 742
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	652, 702
Eco24I	GRGCYC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	570, 787
Eco57I	CTGAAG	1 cut(s)	767
Eco88I	CYCGRG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	652, 702
EcoT22I	ATGCAT	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	442
ErhI	CCWWGG	2 cut(s)	652, 702
FaeI	CATG	3 cut(s)	458, 577, 629
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	3 cut(s)	454, 573, 625
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	2 cut(s)	639, 812
Fnu4HI	GCNGC	3 cut(s)	351, 411, 780
FokI	GGATG	2 cut(s)	26, 267
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	3 cut(s)	351, 411, 780
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	3 cut(s)	351, 411, 780
GsuI	CTGGAG	2 cut(s)	362, 667
HaeIII	GGCC	2 cut(s)	434, 701
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	3 cut(s)	458, 577, 629
HincII	GTYRAC	1 cut(s)	509
HindII	GTYRAC	1 cut(s)	509
HinfI	GANTC	1 cut(s)	684
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	371, 527
Hpy166II	GTNNAC	7 cut(s)	139, 141, 362, 509, 518, 640, 813
Hpy188I	TCNGA	3 cut(s)	321, 715, 747
Hpy188III	TCNNGA	5 cut(s)	208, 523, 587, 602, 646
Hpy8I	GTNNAC	7 cut(s)	139, 141, 362, 509, 518, 640, 813
HpyAV	CCTTC	3 cut(s)	133, 506, 720
HpyCH4III	ACNGT	3 cut(s)	145, 225, 452
HpyCH4IV	ACGT	2 cut(s)	406, 465
HpyCH4V	TGCA	8 cut(s)	59, 92, 220, 425, 550, 782, 825, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 431
HpyF3I	CTNAG	2 cut(s)	228, 603
HpySE526I	ACGT	2 cut(s)	406, 465
Hsp92II	CATG	3 cut(s)	458, 577, 629
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	316, 742
LmnI	GCTCC	2 cut(s)	648, 706
Lsp1109I	GCAGC	2 cut(s)	397, 766
LweI	GCATC	3 cut(s)	101, 434, 619
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	406, 465
MalI	GATC	2 cut(s)	318, 744
MboI	GATC	2 cut(s)	316, 742
MboII	GAAGA	2 cut(s)	196, 266
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	3 cut(s)	61, 468, 765
MlyI	GAGTC	1 cut(s)	693
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	212, 605, 609, 691, 699, 765
Mph1103I	ATGCAT	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	2 cut(s)	66, 195
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	709
MwoI	GCNNNNNNNGC	2 cut(s)	303, 431
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	316, 742
NlaIII	CATG	3 cut(s)	458, 577, 629
NlaIV	GGNNCC	1 cut(s)	650
NsiI	ATGCAT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	709
PdmI	GAANNNNTTC	1 cut(s)	495
PkrI	GCNGC	3 cut(s)	352, 412, 781
PleI	GAGTC	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	692
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	787
PsiI	TTATAA	1 cut(s)	794
Psp5II	RGGWCCY	1 cut(s)	787
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	3 cut(s)	433, 570, 787
PspPPI	RGGWCCY	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	2 cut(s)	140, 850
RsaNI	GTAC	2 cut(s)	139, 849
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	66, 195
SatI	GCNGC	3 cut(s)	351, 411, 780
Sau3AI	GATC	2 cut(s)	316, 742
Sau96I	GGNCC	3 cut(s)	433, 570, 787
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	3 cut(s)	101, 434, 619
SinI	GGWCC	2 cut(s)	570, 787
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	3 cut(s)	61, 468, 765
SsiI	CCGC	5 cut(s)	105, 351, 382, 562, 568
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	652, 702
TaaI	ACNGT	3 cut(s)	145, 225, 452
TaiI	ACGT	2 cut(s)	409, 468
TasI	AATT	3 cut(s)	61, 468, 765
TatI	WGTACW	2 cut(s)	138, 848
TauI	GCSGC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	66, 195
Tru9I	TTAA	2 cut(s)	66, 195
TscAI	CASTG	1 cut(s)	552
TseI	GCWGC	2 cut(s)	410, 779
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	570, 787
XapI	RAATTY	1 cut(s)	61
XmiI	GTMKAC	2 cut(s)	639, 812
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	633
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.