Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004008

Physical Location & Seq

Genomic Coordinates Reverse (-)

11105605 .. 11107188

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCACGTGGAAGAGGAGTTCCTATGATGGACCTGAAACGAAGTTATGATGTTGAAGACAGGGTGGTGTCCGTGTCTATACCATCAATAATCGAAGCTGATGAGGCTGATCTGTGGCCACTACCTGAGATTGATACCAAGAAGTCGAAATTTCCTTGCTGTATAGTTTGGACTCCTCTTCCTGTTGTCTCTTGGTTGGCTCCTTTCATTGGTCATATTGGACTTTGCAGAGAAGATGGAGTCATTTTGGACTTTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAGTGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGTATGGATTCAAACACACCGACTTTGGAACAGCGCGTACATGGGATAATGCACTGAGCTCGAGCACACGTAGCTTTGAGCATAAAACCTACAACATCTTCACTTGTAACTGCCATTCGTTTGTTGCAAACTGTTTGAACCGTCTTTGCTATGGTGGCTCAATGGAGTGGAATATGGTGAATGTTGCTATTTTACTTATGATCAAAGGGAAATGGATCAATGGTTCATCAGTAGTCCGCTCGTTTCTGCCATGTGCTGTGGTCACGTCTTTGGGGGTGGTGCTTGTCGGCTGGCCATTCCTCATCGGTCTCTCTTCGTTCTCGCTACTACTCTTTGCCTGGTTCATAATTGCTACTTACTGTTTTAAGAACATAATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009966 GO:0009968 GO:0010033 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070297 GO:0070298 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

250

Amino Acids

27.93

Weight (kDa)

7.96

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RTE1	PF05608	45 - 193	4e-72	RTE1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26070 AT2G26070
fragaria_vesca	FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960
malus_domestica	MD08G1061000.v1.1 MD15G1060400.v1.1
prunus_persica	Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1
pyrus_communis	pycom08g05060
rosa_chinensis	RchiOBHm_Chr6g0290781 RchiOBHm_Chr6g0310861
rosa_laevigata	RLG00000010456
rosa_multiflora	Rmu_sc0027713.1_g000003 Rmu_ssc0000395.1_g000006
rosa_roxburghii	Rroxscaffold_7G00158240
rosa_rugosa	Rorug06G0214600 Rorug06G0383500 Rorug06G0383500 Rorug06G0383600
rosa_samantha	Rh6AG497300 Rh6BG507400 Rh6CG513400 Rh6DG500000
rosa_wichuraiana	Rw6G028250 Rw6G043310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	609
AccII	CGCG	1 cut(s)	406
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	2 cut(s)	268, 593
AcoI	YGGCCR	2 cut(s)	116, 662
AcsI	RAATTY	1 cut(s)	149
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	209, 353
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	56, 382, 508
AjiI	CACGTC	1 cut(s)	636
AjnI	CCWGG	1 cut(s)	707
AloI	GAACNNNNNNTCC	3 cut(s)	35, 577, 609
AluBI	AGCT	3 cut(s)	98, 429, 444
AluI	AGCT	3 cut(s)	98, 429, 444
Alw21I	GWGCWC	2 cut(s)	431, 437
Alw26I	GTCTC	2 cut(s)	193, 683
AlwI	GGATC	2 cut(s)	268, 593
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	2 cut(s)	116, 662
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	31, 296
AsuHPI	GGTGA	1 cut(s)	559
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	31, 296
BalI	TGGCCA	2 cut(s)	118, 664
BanII	GRGCYC	1 cut(s)	431
BbrPI	CACGTG	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	431, 437
BccI	CCATC	3 cut(s)	22, 91, 230
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	1 cut(s)	709
BclI	TGATCA	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	193, 683
Bme1390I	CCNGG	1 cut(s)	709
Bme18I	GGWCC	2 cut(s)	31, 296
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	636
BmgT120I	GGNCC	2 cut(s)	31, 296
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	63
BsaAI	YACGTR	2 cut(s)	8, 440
BsaI	GGTCTC	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 353
BseBI	CCWGG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	209, 353
BseMII	CTCAG	2 cut(s)	117, 416
BseRI	GAGGAG	2 cut(s)	30, 165
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	118, 664
BsiHKAI	GWGCWC	2 cut(s)	431, 437
BsiHKCI	CYCGRG	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	209, 353
BsmAI	GTCTC	2 cut(s)	193, 683
BsnI	GGCC	2 cut(s)	118, 664
Bso31I	GGTCTC	1 cut(s)	683
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	431, 437
Bsp143I	GATC	4 cut(s)	109, 260, 570, 585
BspACI	CCGC	1 cut(s)	607
BspANI	GGCC	2 cut(s)	118, 664
BspCNI	CTCAG	2 cut(s)	118, 417
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	268, 593
BspTNI	GGTCTC	1 cut(s)	683
BsrBI	CCGCTC	1 cut(s)	609
BssMI	GATC	4 cut(s)	109, 260, 570, 585
Bst2UI	CCWGG	1 cut(s)	709
Bst4CI	ACNGT	3 cut(s)	503, 512, 731
Bst6I	CTCTTC	3 cut(s)	7, 183, 688
BstBAI	YACGTR	2 cut(s)	8, 440
BstC8I	GCNNGC	2 cut(s)	307, 662
BstDEI	CTNAG	2 cut(s)	126, 425
BstFNI	CGCG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	4 cut(s)	112, 263, 573, 588
BstMAI	GTCTC	2 cut(s)	193, 683
BstMBI	GATC	4 cut(s)	109, 260, 570, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 441, 525
BstNI	CCWGG	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	707
BstUI	CGCG	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	118, 664
BtrI	CACGTC	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	307, 662
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	31, 296
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	2 cut(s)	411, 621
CviJI	RGCY	9 cut(s)	98, 107, 118, 200, 429, 444, 528, 660, 664
CviKI_1	RGCY	9 cut(s)	98, 107, 118, 200, 429, 444, 528, 660, 664
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	126, 425
DpnI	GATC	4 cut(s)	111, 262, 572, 587
DpnII	GATC	4 cut(s)	109, 260, 570, 585
EaeI	YGGCCR	2 cut(s)	116, 662
Eam1104I	CTCTTC	3 cut(s)	7, 183, 688
EarI	CTCTTC	3 cut(s)	7, 183, 688
Ecl136II	GAGCTC	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	2 cut(s)	31, 296
Eco53kI	GAGCTC	1 cut(s)	429
Eco72I	CACGTG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	707
EcoT38I	GRGCYC	1 cut(s)	431
FaeI	CATG	2 cut(s)	414, 624
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	2 cut(s)	410, 620
FbaI	TGATCA	1 cut(s)	570
FriOI	GRGCYC	1 cut(s)	431
GlaI	GCGC	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	118, 664
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	2 cut(s)	414, 624
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	3 cut(s)	172, 240, 378
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	359
Hpy8I	GTNNAC	1 cut(s)	359
HpyCH4III	ACNGT	3 cut(s)	503, 512, 731
HpyCH4IV	ACGT	3 cut(s)	7, 439, 635
HpyCH4V	TGCA	5 cut(s)	228, 290, 369, 422, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 441, 525
HpyF3I	CTNAG	2 cut(s)	126, 425
HpySE526I	ACGT	3 cut(s)	7, 439, 635
Hsp92II	CATG	2 cut(s)	414, 624
HspAI	GCGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	4 cut(s)	109, 260, 570, 585
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	46, 47, 138, 195, 243, 315, 646, 694, 721
MaeII	ACGT	3 cut(s)	7, 439, 635
MaeIII	GTNAC	3 cut(s)	3, 476, 631
MalI	GATC	4 cut(s)	111, 262, 572, 587
MbiI	CCGCTC	1 cut(s)	609
MboI	GATC	4 cut(s)	109, 260, 570, 585
MboII	GAAGA	6 cut(s)	24, 68, 170, 245, 460, 675
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	431, 437
MlsI	TGGCCA	2 cut(s)	118, 664
MluCI	AATT	3 cut(s)	149, 717, 744
MluNI	TGGCCA	2 cut(s)	118, 664
MlyI	GAGTC	2 cut(s)	166, 249
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	8, 97, 186, 309, 680
Mox20I	TGGCCA	2 cut(s)	118, 664
MscI	TGGCCA	2 cut(s)	118, 664
MseI	TTAA	1 cut(s)	735
Msp20I	TGGCCA	2 cut(s)	118, 664
MspR9I	CCNGG	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	709
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	104, 441, 525
NdeII	GATC	4 cut(s)	109, 260, 570, 585
NlaIII	CATG	2 cut(s)	414, 624
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	3, 631
PaeR7I	CTCGAG	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	378
PleI	GAGTC	2 cut(s)	166, 248
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	166, 248
Ppu21I	YACGTR	2 cut(s)	8, 440
Psp124BI	GAGCTC	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	707
PspCI	CACGTG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	707
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	31, 296
PspXI	VCTCGAGB	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	391, 423
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	735
Sau3AI	GATC	4 cut(s)	109, 260, 570, 585
Sau96I	GGNCC	2 cut(s)	31, 296
SchI	GAGTC	2 cut(s)	166, 249
ScrFI	CCNGG	1 cut(s)	709
SduI	GDGCHC	2 cut(s)	431, 437
SetI	ASST	9 cut(s)	10, 36, 100, 127, 431, 442, 446, 461, 638
Sfr274I	CTCGAG	1 cut(s)	430
SinI	GGWCC	2 cut(s)	31, 296
SlaI	CTCGAG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	3 cut(s)	149, 717, 744
SsiI	CCGC	1 cut(s)	607
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	707
TaaI	ACNGT	3 cut(s)	503, 512, 731
TaiI	ACGT	3 cut(s)	10, 442, 638
TaqI	TCGA	4 cut(s)	93, 146, 321, 431
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	3 cut(s)	149, 717, 744
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	3, 631
Tsp45I	GTSAC	2 cut(s)	3, 631
TspDTI	ATGAA	4 cut(s)	196, 259, 585, 703
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	31, 296
XapI	RAATTY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.