RLG00000010456

Protein REVERSION-TO-ETHYLENE SENSITIVITY1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004008
Physical Location & Seq
Forward (+)
1750014 .. 1750887
874 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010456

Sequence Viewer

Length: 708 bp
ATGGAGATAAAGAAAGCTTATGATATCGAACATATGTGCTCGACGCATGGTATTCAGCATGAGTTGTGGCCTCTTGATGACGTTGATGCAAAGAAGGCAAAGTTTCCCTGTTGTTTAGTTTGGACTCCTCTTCCTGTCGTCTCTTGGTTGGCACCTTTCATTGGACATGTTGGCATTTGCAGGGAGGATGGAGTTATATTAGATTTTGCAGGCTCCAATTTTGTGAATGTTGATGATTTTGCATTTGGTGCTGTTGCTAGATATCTTCAACTTGATAGAAAACAGTGTTGTTTTACCCCAAATCTTGGTAGCCACACTTGCAAGCATGGCTACAAGCATGCAGAGTTTGGGACTGCAATCACCTGGGATGATGCCTTGCAGTCGAGCACGCGCTACATTGAGCACAAGACCTACAACCTTTTCACTTGCAACAGCCACTCGTTCGTAGCAAACTTTCTGAATCGGATATGCTACGGTGGATCAATGCATTGGAACATGATAAATGTGGCGGCTTTAGTATTGCTCAAGGGGCATTGGGTTGATGCCATGTCTGTCTTGAAGTCATTCCTCCCTTTTCTACTGGTGCTCTGTCTAGGTGTTTACATGGTTGGGTGGCCATTCGTGGTGGCTCTTTTCTGCTTCTCTTCTCTCCTCTTGCTGTGGTTTGTACTTGGCACTTATTGTTTTAAGACCTTGTTAGAGTGCTAG

Protein Analysis

236

Amino Acids

26.65

Weight (kDa)

6.57

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTE1 PF05608 29 - 177 6.9e-72 RTE1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccB7I CCANNNNNTGG 1 cut(s) 305
AccII CGCG 1 cut(s) 391
AciI CCGC 1 cut(s) 509
AclWI GGATC 1 cut(s) 487
AcoI YGGCCR 1 cut(s) 614
AfaI GTAC 1 cut(s) 669
AfiI CCNNNNNNNGG 2 cut(s) 161, 305
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 269, 559
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw21I GWGCWC 4 cut(s) 41, 389, 405, 588
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 487
AoxI GGCC 2 cut(s) 68, 614
Asp700I GAANNNNTTC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 352
BalI TGGCCA 1 cut(s) 616
BanI GGYRCC 1 cut(s) 151
Bbv12I GWGCWC 4 cut(s) 41, 389, 405, 588
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 3 cut(s) 258, 593, 706
BisI GCNGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 153, 214
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 76, 361, 532
BpuEI CTTGAG 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 305
Bse1I ACTGG 1 cut(s) 585
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 193, 373
BseLI CCNNNNNNNGG 2 cut(s) 161, 305
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 2 cut(s) 117, 641
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 70, 616
BshNI GGYRCC 1 cut(s) 151
BsiHKAI GWGCWC 4 cut(s) 41, 389, 405, 588
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 161, 305
BsmAI GTCTC 1 cut(s) 145
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 70, 616
Bsp1286I GDGCHC 4 cut(s) 41, 389, 405, 588
Bsp143I GATC 1 cut(s) 479
BspACI CCGC 1 cut(s) 509
BspANI GGCC 2 cut(s) 70, 616
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 153, 214
BspPI GGATC 1 cut(s) 487
BspT107I GGYRCC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 285, 476
Bst6I CTCTTC 2 cut(s) 135, 649
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 4 cut(s) 211, 323, 339, 389
BstF5I GGATG 2 cut(s) 193, 373
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 482
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 479
BstMWI GCNNNNNNNGC 5 cut(s) 95, 248, 318, 327, 529
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 2 cut(s) 170, 341
BstSCI CCNGG 1 cut(s) 362
BstUI CGCG 1 cut(s) 391
BsuRI GGCC 2 cut(s) 70, 616
BtsCI GGATG 2 cut(s) 193, 373
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 4 cut(s) 211, 323, 339, 389
CfoI GCGC 1 cut(s) 393
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 668
CviAII CATG 8 cut(s) 47, 59, 167, 326, 338, 496, 547, 604
CviJI RGCY 9 cut(s) 17, 70, 213, 312, 330, 435, 512, 616, 629
CviKI_1 RGCY 9 cut(s) 17, 70, 213, 312, 330, 435, 512, 616, 629
CviQI GTAC 1 cut(s) 668
DpnI GATC 1 cut(s) 481
DpnII GATC 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 2 cut(s) 135, 649
EarI CTCTTC 2 cut(s) 135, 649
Eco32I GATATC 2 cut(s) 25, 263
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 2 cut(s) 25, 263
EcoT22I ATGCAT 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 8 cut(s) 50, 62, 170, 329, 341, 499, 550, 607
FaqI GGGAC 1 cut(s) 364
FatI CATG 8 cut(s) 46, 58, 166, 325, 337, 495, 546, 603
FauNDI CATATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 2 cut(s) 200, 380
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 3 cut(s) 258, 593, 706
GlaI GCGC 1 cut(s) 392
GluI GCNGC 1 cut(s) 510
HaeIII GGCC 2 cut(s) 70, 616
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 393
Hin1II CATG 8 cut(s) 50, 62, 170, 329, 341, 499, 550, 607
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 124, 460
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 2 cut(s) 459, 465
Hpy188III TCNNGA 2 cut(s) 74, 556
Hpy8I GTNNAC 1 cut(s) 601
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 285, 476
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 248, 318, 327, 529
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 8 cut(s) 50, 62, 170, 329, 341, 499, 550, 607
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 479
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 7 cut(s) 121, 147, 166, 195, 349, 376, 566
LweI GCATC 3 cut(s) 76, 361, 532
MaeI CTAG 3 cut(s) 258, 593, 706
MaeII ACGT 1 cut(s) 81
MalI GATC 1 cut(s) 481
MboI GATC 1 cut(s) 479
MboII GAAGA 3 cut(s) 122, 257, 636
MhlI GDGCHC 4 cut(s) 41, 389, 405, 588
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 1 cut(s) 217
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 5 cut(s) 81, 138, 178, 578, 662
Mox20I TGGCCA 1 cut(s) 616
Mph1103I ATGCAT 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 563
MscI TGGCCA 1 cut(s) 616
MseI TTAA 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 616
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 5 cut(s) 95, 248, 318, 327, 529
NdeI CATATG 1 cut(s) 33
NdeII GATC 1 cut(s) 479
NlaIII CATG 8 cut(s) 50, 62, 170, 329, 341, 499, 550, 607
NlaIV GGNNCC 2 cut(s) 153, 214
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 2 cut(s) 170, 341
PaeI GCATGC 1 cut(s) 341
PciI ACATGT 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 1 cut(s) 460
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PscI ACATGT 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 153, 214
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 1 cut(s) 510
Sau3AI GATC 1 cut(s) 479
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 4 cut(s) 41, 389, 405, 588
SetI ASST 8 cut(s) 19, 84, 157, 365, 413, 420, 598, 695
SfaNI GCATC 3 cut(s) 76, 361, 532
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SphI GCATGC 1 cut(s) 341
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 509
SspMI CTAG 3 cut(s) 258, 593, 706
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 285, 476
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 27, 41, 383
TasI AATT 1 cut(s) 217
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 148
TspRI CASTG 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 305
XceI RCATGY 2 cut(s) 170, 341
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 3 cut(s) 258, 593, 706
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.