Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004008

Physical Location & Seq

Genomic Coordinates Reverse (-)

65643526 .. 65644952

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG500000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCATCAGAGTAGACTTCCTGTAATGGAGATAAAGAAAGCTTATGATATCGAACATATGTGCTCGACGCATGGTATTCAGCATGAGTTGTGGCCTCTTGATGACGTTGATGCAAAGAAGGCAAAGTTTCCCTGTTGTTTAGTTTGGACTCCTCTTCCTGTCGTCTCTTGGTTGGCACCTTTCATTGGACATGTTGGCATTTGCAGGGAGGATGGAGTTATTTTAGATTTTGCAGGCTCCAATTTTGTGAATGTTGATGATTTTGCATTTGGTGCTGTTGCTAGATATCTTCAACTTGATAGAAAACAGTGTTGTTTTACCCCAAATCTTGGTAGCCACACTTGCAAGCATGGCTACAAGCATGCAGAGTTTGGGACTGCAATCACCTGGGACGATGCCCTGCAATCGAGCACGCGCTACATTGAGCACAAAACCTACAACCTTTTCACTTGCAACAGCCACTCGTTTGTAGCAAACTTTCTGAATCGGATATGCTACGGTGGATCAATGCATTGGAACATGATAAATGTGGCGGCTTTAGTACTGCTCAAGGGGCATTGGGTTGATGCCATGTCTGTCTTGAAGTCATTCCTCCCTTTTCTACTGGTGTTCTGTCTAGGTGTTTACATGGTTGGGTGGCCATTCGTGGTGGCGCTTTTCTCCTTCTCTTCTCTCCTCTTGCTGTGGAACCTTTCATATGGTGCAACTGAAGACAAGAAGCTACAAAATAAACTGCTCAGTCAACCCACATTTAATCAAATTGTTCCATCAATGCTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009966 GO:0009968 GO:0010033 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070297 GO:0070298 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

260

Amino Acids

29.49

Weight (kDa)

6.85

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RTE1	PF05608	37 - 185	9.2e-72	RTE1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26070 AT2G26070
fragaria_vesca	FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960
malus_domestica	MD08G1061000.v1.1 MD15G1060400.v1.1
prunus_persica	Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1
pyrus_communis	pycom08g05060
rosa_chinensis	RchiOBHm_Chr6g0290781 RchiOBHm_Chr6g0310861
rosa_laevigata	RLG00000010456
rosa_multiflora	Rmu_sc0027713.1_g000003 Rmu_ssc0000395.1_g000006
rosa_roxburghii	Rroxscaffold_7G00158240
rosa_rugosa	Rorug06G0214600 Rorug06G0383500 Rorug06G0383500 Rorug06G0383600
rosa_samantha	Rh6AG497300 Rh6BG507400 Rh6CG513400 Rh6DG500000
rosa_wichuraiana	Rw6G028250 Rw6G043310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	415
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	1 cut(s)	638
AcuI	CTGAAG	1 cut(s)	729
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	2 cut(s)	185, 329
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	293, 583
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	2 cut(s)	41, 721
AluI	AGCT	2 cut(s)	41, 721
Alw21I	GWGCWC	3 cut(s)	65, 413, 429
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	2 cut(s)	92, 638
Asp700I	GAANNNNTTC	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	417, 655
AsuHPI	GGTGA	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	3 cut(s)	65, 413, 429
BccI	CCATC	2 cut(s)	206, 775
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	282, 617
BfoI	RGCGCY	1 cut(s)	656
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
BmcAI	AGTACT	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	388
BmiI	GGNNCC	3 cut(s)	177, 238, 689
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	4 cut(s)	13, 100, 385, 556
BpiI	GAAGAC	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 329
Bse1I	ACTGG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	185, 329
BseMII	CTCAG	1 cut(s)	751
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	2 cut(s)	141, 665
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	94, 640
BshNI	GGYRCC	1 cut(s)	175
BsiHKAI	GWGCWC	3 cut(s)	65, 413, 429
BslFI	GGGAC	2 cut(s)	388, 404
BslI	CCNNNNNNNGG	2 cut(s)	185, 329
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	388, 404
BsnI	GGCC	2 cut(s)	94, 640
Bsp1286I	GDGCHC	3 cut(s)	65, 413, 429
Bsp143I	GATC	1 cut(s)	503
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	2 cut(s)	94, 640
BspCNI	CTCAG	1 cut(s)	750
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	177, 238, 689
BspPI	GGATC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	309, 500
Bst6I	CTCTTC	2 cut(s)	159, 673
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	4 cut(s)	235, 347, 363, 413
BstDEI	CTNAG	1 cut(s)	737
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	2 cut(s)	417, 655
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	503
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 272, 342, 351, 553
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	2 cut(s)	194, 365
BstSCI	CCNGG	1 cut(s)	386
BstUI	CGCG	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	94, 640
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	4 cut(s)	235, 347, 363, 413
CfoI	GCGC	2 cut(s)	417, 655
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	8 cut(s)	71, 83, 191, 350, 362, 520, 571, 628
CviJI	RGCY	9 cut(s)	41, 94, 237, 336, 354, 459, 536, 640, 721
CviKI_1	RGCY	9 cut(s)	41, 94, 237, 336, 354, 459, 536, 640, 721
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	1 cut(s)	737
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	638
Eam1104I	CTCTTC	2 cut(s)	159, 673
EarI	CTCTTC	2 cut(s)	159, 673
Eco32I	GATATC	2 cut(s)	49, 287
Eco57I	CTGAAG	1 cut(s)	729
EcoRII	CCWGG	1 cut(s)	386
EcoRV	GATATC	2 cut(s)	49, 287
EcoT22I	ATGCAT	2 cut(s)	6, 513
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	8 cut(s)	74, 86, 194, 353, 365, 523, 574, 631
FaqI	GGGAC	2 cut(s)	388, 404
FatI	CATG	8 cut(s)	70, 82, 190, 349, 361, 519, 570, 627
FauNDI	CATATG	2 cut(s)	57, 697
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	2 cut(s)	282, 617
GlaI	GCGC	2 cut(s)	416, 654
GluI	GCNGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	94, 640
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	417, 655
Hin1II	CATG	8 cut(s)	74, 86, 194, 353, 365, 523, 574, 631
Hin6I	GCGC	2 cut(s)	415, 653
HinP1I	GCGC	2 cut(s)	415, 653
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	148, 484
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	3 cut(s)	14, 625, 743
Hpy188I	TCNGA	3 cut(s)	9, 483, 489
Hpy188III	TCNNGA	2 cut(s)	98, 580
Hpy8I	GTNNAC	3 cut(s)	14, 625, 743
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	112, 673
HpyCH4III	ACNGT	2 cut(s)	309, 500
HpyCH4IV	ACGT	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 272, 342, 351, 553
HpyF3I	CTNAG	1 cut(s)	737
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	8 cut(s)	74, 86, 194, 353, 365, 523, 574, 631
HspAI	GCGC	2 cut(s)	415, 653
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	1 cut(s)	242
LweI	GCATC	4 cut(s)	13, 100, 385, 556
MaeI	CTAG	2 cut(s)	282, 617
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	505
MboI	GATC	1 cut(s)	503
MboII	GAAGA	4 cut(s)	146, 281, 660, 722
MhlI	GDGCHC	3 cut(s)	65, 413, 429
MlsI	TGGCCA	1 cut(s)	640
MluCI	AATT	2 cut(s)	241, 759
MluNI	TGGCCA	1 cut(s)	640
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	5 cut(s)	105, 162, 202, 602, 686
Mox20I	TGGCCA	1 cut(s)	640
Mph1103I	ATGCAT	2 cut(s)	6, 513
MroXI	GAANNNNTTC	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	640
MseI	TTAA	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	640
MspR9I	CCNGG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	5 cut(s)	119, 272, 342, 351, 553
NdeI	CATATG	2 cut(s)	57, 697
NdeII	GATC	1 cut(s)	503
NlaIII	CATG	8 cut(s)	74, 86, 194, 353, 365, 523, 574, 631
NlaIV	GGNNCC	3 cut(s)	177, 238, 689
NsiI	ATGCAT	2 cut(s)	6, 513
NspI	RCATGY	2 cut(s)	194, 365
PaeI	GCATGC	1 cut(s)	365
PciI	ACATGT	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	3 cut(s)	177, 238, 689
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	1 cut(s)	503
ScaI	AGTACT	1 cut(s)	543
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	3 cut(s)	65, 413, 429
SetI	ASST	9 cut(s)	43, 108, 181, 389, 437, 444, 622, 693, 723
SfaNI	GCATC	4 cut(s)	13, 100, 385, 556
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	241, 759
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	2 cut(s)	282, 617
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	309, 500
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	51, 65, 407
TasI	AATT	2 cut(s)	241, 759
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	172, 684
TspRI	CASTG	1 cut(s)	314
Van91I	CCANNNNNTGG	1 cut(s)	329
XceI	RCATGY	2 cut(s)	194, 365
XmiI	GTMKAC	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	2 cut(s)	282, 617
ZrmI	AGTACT	1 cut(s)	543
Zsp2I	ATGCAT	2 cut(s)	6, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.