Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004008

Physical Location & Seq

Genomic Coordinates Forward (+)

53775248 .. 53776171

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCATCATAGTAGACTTCCTGTAATGGAGATAAAGAAAGCTTATGATATCGAACATATGCGCTCGACGCATGGTATTCAGCATGAGTTGTGGCCTCTTGATGACGTTGATGCAAAGAAGGCAAAGTTTCCCTGTTGTTTAGTTTGGACTCCTCTTCCTGTCGTCTCTTGGTTGGCACCTTCCATTGGACATGTTGGCATTTGCAGGGAGGATGGATGTTGTTTTACCCCAAATCTGGGTGGCCACACTTGCAAGCATGGCTACAAGCATGCAGAGTTTGGGACTGCAATCACCTGGGATGATGCCCTGCAATCGAGCACGCGCTACATTGAGCATAAAACCTACAACCTTTTCACTTGCAACAGCCACTCGTTCGTAGCAAACTTTCTGAATCGGATATGCTACGGTGGATCAATGCATTGGAACATGATAAATGTGGCGGCTTTAGTACTGCTCAAAGGGCATTGGGTTGATGCCATGTCTGTCTTGAAGTCATTCCTCCCTTTTCCTGGTGCTCTGTCTAGGTATTTACATGGTTGGGTGGCCATTCGTGGTGGCGCTTTTCTCCTTCTCCTCTCCTCTTGCTGTGGTTTGTACTTGGCACTTATTGTTTTAAGACTGTTAAGAGTGCTAGTTCTTCCTTCTTCTTTTTTTTTAATTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009966 GO:0009968 GO:0010033 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070297 GO:0070298 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

222

Amino Acids

25.05

Weight (kDa)

8.68

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RTE1	PF05608	37 - 73	1.7e-18	RTE1-like
RTE1	PF05608	71 - 154	3.7e-27	RTE1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26070 AT2G26070
fragaria_vesca	FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960
malus_domestica	MD08G1061000.v1.1 MD15G1060400.v1.1
prunus_persica	Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1
pyrus_communis	pycom08g05060
rosa_chinensis	RchiOBHm_Chr6g0290781 RchiOBHm_Chr6g0310861
rosa_laevigata	RLG00000010456
rosa_multiflora	Rmu_sc0027713.1_g000003 Rmu_ssc0000395.1_g000006
rosa_roxburghii	Rroxscaffold_7G00158240
rosa_rugosa	Rorug06G0214600 Rorug06G0383500 Rorug06G0383500 Rorug06G0383600
rosa_samantha	Rh6AG497300 Rh6BG507400 Rh6CG513400 Rh6DG500000
rosa_wichuraiana	Rw6G028250 Rw6G043310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	322
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	2 cut(s)	241, 543
AfaI	GTAC	2 cut(s)	450, 596
AfiI	CCNNNNNNNGG	4 cut(s)	185, 235, 236, 509
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	293, 508
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw21I	GWGCWC	2 cut(s)	320, 517
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	418
AoxI	GGCC	3 cut(s)	92, 241, 543
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	3 cut(s)	63, 324, 560
AsuHPI	GGTGA	1 cut(s)	283
BalI	TGGCCA	2 cut(s)	243, 545
BanI	GGYRCC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	320, 517
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	295, 510
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	522, 632
BfoI	RGCGCY	1 cut(s)	561
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmcAI	AGTACT	1 cut(s)	450
Bme1390I	CCNGG	2 cut(s)	295, 510
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	295, 510
BmsI	GCATC	4 cut(s)	13, 100, 292, 463
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 235, 236, 509
BseBI	CCWGG	2 cut(s)	295, 510
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	217, 221, 304
BseLI	CCNNNNNNNGG	4 cut(s)	185, 235, 236, 509
BseRI	GAGGAG	3 cut(s)	141, 563, 568
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	94, 243, 545
BshNI	GGYRCC	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	320, 517
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	4 cut(s)	185, 235, 236, 509
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	94, 243, 545
Bsp1286I	GDGCHC	2 cut(s)	320, 517
Bsp143I	GATC	1 cut(s)	410
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	3 cut(s)	94, 243, 545
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	295, 510
Bst4CI	ACNGT	2 cut(s)	407, 621
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	254, 270, 320
BstF5I	GGATG	3 cut(s)	217, 221, 304
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	3 cut(s)	63, 324, 560
BstKTI	GATC	1 cut(s)	413
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 119, 249, 258, 460
BstNI	CCWGG	2 cut(s)	295, 510
BstNSI	RCATGY	2 cut(s)	194, 272
BstSCI	CCNGG	2 cut(s)	293, 508
BstUI	CGCG	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	94, 243, 545
BtsCI	GGATG	3 cut(s)	217, 221, 304
Cac8I	GCNNGC	3 cut(s)	254, 270, 320
CfoI	GCGC	3 cut(s)	63, 324, 560
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	449, 595
CviAII	CATG	8 cut(s)	71, 83, 191, 257, 269, 427, 478, 533
CviJI	RGCY	7 cut(s)	41, 94, 243, 261, 366, 443, 545
CviKI_1	RGCY	7 cut(s)	41, 94, 243, 261, 366, 443, 545
CviQI	GTAC	2 cut(s)	449, 595
DpnI	GATC	1 cut(s)	412
DpnII	GATC	1 cut(s)	410
EaeI	YGGCCR	2 cut(s)	241, 543
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	293, 508
EcoRV	GATATC	1 cut(s)	49
EcoT22I	ATGCAT	2 cut(s)	6, 420
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	8 cut(s)	74, 86, 194, 260, 272, 430, 481, 536
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	8 cut(s)	70, 82, 190, 256, 268, 426, 477, 532
FauNDI	CATATG	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	3 cut(s)	224, 228, 311
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	522, 632
GlaI	GCGC	3 cut(s)	62, 323, 559
GluI	GCNGC	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	94, 243, 545
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	3 cut(s)	63, 324, 560
Hin1II	CATG	8 cut(s)	74, 86, 194, 260, 272, 430, 481, 536
Hin6I	GCGC	3 cut(s)	61, 322, 558
HinP1I	GCGC	3 cut(s)	61, 322, 558
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	148, 391
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	390, 396
Hpy188III	TCNNGA	2 cut(s)	98, 487
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	112, 189, 578, 651
HpyCH4III	ACNGT	2 cut(s)	407, 621
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	9 cut(s)	4, 113, 204, 252, 272, 287, 310, 360, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 119, 249, 258, 460
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	8 cut(s)	74, 86, 194, 260, 272, 430, 481, 536
HspAI	GCGC	3 cut(s)	61, 322, 558
Kzo9I	GATC	1 cut(s)	410
LweI	GCATC	4 cut(s)	13, 100, 292, 463
MaeI	CTAG	2 cut(s)	522, 632
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	412
MboI	GATC	1 cut(s)	410
MboII	GAAGA	3 cut(s)	146, 629, 636
MhlI	GDGCHC	2 cut(s)	320, 517
MlsI	TGGCCA	2 cut(s)	243, 545
MluCI	AATT	1 cut(s)	657
MluNI	TGGCCA	2 cut(s)	243, 545
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	6 cut(s)	105, 162, 202, 509, 584, 589
Mox20I	TGGCCA	2 cut(s)	243, 545
Mph1103I	ATGCAT	2 cut(s)	6, 420
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	2 cut(s)	243, 545
MseI	TTAA	4 cut(s)	614, 623, 656, 667
Msp20I	TGGCCA	2 cut(s)	243, 545
MspR9I	CCNGG	2 cut(s)	295, 510
MvaI	CCWGG	2 cut(s)	295, 510
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	5 cut(s)	67, 119, 249, 258, 460
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	1 cut(s)	410
NlaIII	CATG	8 cut(s)	74, 86, 194, 260, 272, 430, 481, 536
NlaIV	GGNNCC	1 cut(s)	177
NsiI	ATGCAT	2 cut(s)	6, 420
NspI	RCATGY	2 cut(s)	194, 272
PaeI	GCATGC	1 cut(s)	272
PciI	ACATGT	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	293, 508
PspGI	CCWGG	2 cut(s)	293, 508
PspN4I	GGNNCC	1 cut(s)	177
RsaI	GTAC	2 cut(s)	450, 596
RsaNI	GTAC	2 cut(s)	449, 595
SaqAI	TTAA	4 cut(s)	614, 623, 656, 667
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	450
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	295, 510
SduI	GDGCHC	2 cut(s)	320, 517
SetI	ASST	7 cut(s)	43, 108, 181, 296, 344, 351, 527
SfaNI	GCATC	4 cut(s)	13, 100, 292, 463
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	1 cut(s)	657
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	2 cut(s)	522, 632
StyD4I	CCNGG	2 cut(s)	293, 508
TaaI	ACNGT	2 cut(s)	407, 621
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	51, 65, 314
TasI	AATT	1 cut(s)	657
TatI	WGTACW	2 cut(s)	448, 594
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	4 cut(s)	614, 623, 656, 667
Tru9I	TTAA	4 cut(s)	614, 623, 656, 667
XceI	RCATGY	2 cut(s)	194, 272
XmiI	GTMKAC	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	2 cut(s)	522, 632
ZrmI	AGTACT	1 cut(s)	450
Zsp2I	ATGCAT	2 cut(s)	6, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.