Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004008

Physical Location & Seq

Genomic Coordinates Forward (+)

35977758 .. 35980539

Gene Structure 2782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G412400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAGCACATTAGATTTCCTGTAATGGAGGTAAAAGAAGCTTATGACGTTGAGCATATGAGGTCTACACAGAGTATCCAGCATGAGCTGTGGCCTCTTGATGAAATTGATCCAAAGAAGGCAAAATTTCCCTGTTGTTTAGTTTGGACTCCTCTCCCAATAGTCTCTTGGTTGGCACCATTCATTGGACATGTTGGCATTTGCAGGGAGGATGGAGCTATTTTAGATTTCGCAGGTTCCAATTTTGTGAATGCCGATGATTTCGCATTTGGTGCTGTAGCCAGATATCTACAGCTTGATAGAACACAGTGTTGTTTCGCCGCAAATCTGGGTGGCCACACTTGCAAGAGTGGCTACAAGCATGCAGAGTTTGGGACGGCAATCACATGGGACGATGCCCTGCAGTCAAGTTCACGGCACTTTGAACACAAAACCTACAACCTTTTCACTTGCAACTGCCATTCTTTCGTAGCCAACTGTCTGAATCGGATATTCTATAGTGGATCAATGAGTTGGAACATGATCAATGTGGCAGGCTTAGTACTGCTCAAGGGGCAATGGGTTGACTCCATGTCCGTCTTGAGGTCGTTCCTCCCTTTTCTATTGGTGCTCTCTCTAGGTGTTTTCATGGTTGGATGGCCTTTCTTGGTTGCGCTTCTCTCTTTCTCTCTCCTCCTCCTGGTGTGGTTTCTACTGGGCAGTTATTGTTTCAAGACCTTGTTAGAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009966 GO:0009968 GO:0010033 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070297 GO:0070298 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

244

Amino Acids

27.51

Weight (kDa)

6.28

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26070 AT2G26070
fragaria_vesca	FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960 FvH4_2g31960
malus_domestica	MD08G1061000.v1.1 MD15G1060400.v1.1
prunus_persica	Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1 Prupe.1G412400_v2.0.a1
pyrus_communis	pycom08g05060
rosa_chinensis	RchiOBHm_Chr6g0290781 RchiOBHm_Chr6g0310861
rosa_laevigata	RLG00000010456
rosa_multiflora	Rmu_sc0027713.1_g000003 Rmu_ssc0000395.1_g000006
rosa_roxburghii	Rroxscaffold_7G00158240
rosa_rugosa	Rorug06G0214600 Rorug06G0383500 Rorug06G0383500 Rorug06G0383600
rosa_samantha	Rh6AG497300 Rh6BG507400 Rh6CG513400 Rh6DG500000
rosa_wichuraiana	Rw6G028250 Rw6G043310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	2 cut(s)	104, 511
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	3 cut(s)	185, 582, 679
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	425, 712
AhdI	GACNNNNNGTC	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	41, 88, 218, 295
AluI	AGCT	4 cut(s)	41, 88, 218, 295
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	104, 511
AoxI	GGCC	3 cut(s)	92, 334, 638
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	655
BalI	TGGCCA	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	206, 630
BceAI	ACGGC	2 cut(s)	393, 431
BciT130I	CCWGG	1 cut(s)	680
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	617, 730
BfmI	CTRYAG	4 cut(s)	276, 290, 401, 496
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	5, 321
BlsI	GCNGC	2 cut(s)	6, 322
BmcAI	AGTACT	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	680
BmeRI	GACNNNNNGTC	1 cut(s)	571
BmiI	GGNNCC	2 cut(s)	177, 238
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	704
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	704
BpuEI	CTTGAG	2 cut(s)	533, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 582, 679
Bse1I	ACTGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	680
BseGI	GGATG	2 cut(s)	217, 641
BseLI	CCNNNNNNNGG	3 cut(s)	185, 582, 679
BseMI	GCAATG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	3 cut(s)	141, 662, 665
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	3 cut(s)	94, 336, 640
BshNI	GGYRCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	612
BslFI	GGGAC	2 cut(s)	388, 404
BslI	CCNNNNNNNGG	3 cut(s)	185, 582, 679
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	388, 404
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	94, 336, 640
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	109, 503, 522
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	3 cut(s)	94, 336, 640
BspLI	GGNNCC	2 cut(s)	177, 238
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	104, 511
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	699
BssMI	GATC	3 cut(s)	109, 503, 522
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	309, 479
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	363, 535
BstDEI	CTNAG	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	217, 641
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	3 cut(s)	112, 506, 525
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	3 cut(s)	109, 503, 522
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 342, 351, 553
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	2 cut(s)	194, 365
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	4 cut(s)	276, 290, 401, 496
BstV1I	GCAGC	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	94, 336, 640
BtsCI	GGATG	2 cut(s)	217, 641
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	363, 535
CfoI	GCGC	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	7 cut(s)	83, 191, 362, 387, 520, 571, 628
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	3 cut(s)	111, 505, 524
DpnII	GATC	3 cut(s)	109, 503, 522
DriI	GACNNNNNGTC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	571
Eco32I	GATATC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	1 cut(s)	287
FaeI	CATG	7 cut(s)	86, 194, 365, 390, 523, 574, 631
FaqI	GGGAC	2 cut(s)	388, 404
FatI	CATG	7 cut(s)	82, 190, 361, 386, 519, 570, 627
FauNDI	CATATG	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	5, 321
FokI	GGATG	2 cut(s)	224, 648
Fsp4HI	GCNGC	2 cut(s)	5, 321
FspBI	CTAG	2 cut(s)	617, 730
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	2 cut(s)	5, 321
HaeIII	GGCC	3 cut(s)	94, 336, 640
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	7 cut(s)	86, 194, 365, 390, 523, 574, 631
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	3 cut(s)	148, 484, 566
Hpy166II	GTNNAC	3 cut(s)	66, 413, 565
Hpy188I	TCNGA	2 cut(s)	483, 489
Hpy188III	TCNNGA	3 cut(s)	98, 580, 712
Hpy8I	GTNNAC	3 cut(s)	66, 413, 565
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	309, 479
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	6 cut(s)	4, 204, 345, 365, 403, 453
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 342, 351, 553
HpyF3I	CTNAG	1 cut(s)	538
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	7 cut(s)	86, 194, 365, 390, 523, 574, 631
HspAI	GCGC	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	109, 503, 522
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	617, 730
MaeII	ACGT	1 cut(s)	48
MalI	GATC	3 cut(s)	111, 505, 524
MboI	GATC	3 cut(s)	109, 503, 522
MhlI	GDGCHC	1 cut(s)	612
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	3 cut(s)	105, 125, 241
MluNI	TGGCCA	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	142, 560
MmeI	TCCRAC	2 cut(s)	494, 613
MnlI	CCTC	9 cut(s)	22, 54, 105, 162, 202, 576, 602, 683, 686
Mox20I	TGGCCA	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	4 cut(s)	272, 342, 351, 553
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	3 cut(s)	109, 503, 522
NlaIII	CATG	7 cut(s)	86, 194, 365, 390, 523, 574, 631
NlaIV	GGNNCC	2 cut(s)	177, 238
NspI	RCATGY	2 cut(s)	194, 365
PaeI	GCATGC	1 cut(s)	365
PciI	ACATGT	1 cut(s)	190
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	6, 322
PleI	GAGTC	2 cut(s)	142, 560
PpsI	GAGTC	2 cut(s)	142, 560
PscI	ACATGT	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	177, 238
PstI	CTGCAG	1 cut(s)	405
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SatI	GCNGC	2 cut(s)	5, 321
Sau3AI	GATC	3 cut(s)	109, 503, 522
ScaI	AGTACT	1 cut(s)	543
SchI	GAGTC	2 cut(s)	142, 560
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	4 cut(s)	276, 290, 401, 496
SmlI	CTYRAG	2 cut(s)	548, 580
SmoI	CTYRAG	2 cut(s)	548, 580
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	105, 125, 241
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	2 cut(s)	617, 730
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	309, 479
TaiI	ACGT	1 cut(s)	51
TasI	AATT	3 cut(s)	105, 125, 241
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	484
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	117, 172, 616
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	1 cut(s)	314
Van91I	CCANNNNNTGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	2 cut(s)	194, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	2 cut(s)	617, 730
ZrmI	AGTACT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.