Rh6AG497300

Protein REVERSION-TO-ETHYLENE SENSITIVITY1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004008
Physical Location & Seq
Reverse (-)
67339300 .. 67341421
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG497300.1

Sequence Viewer

Length: 732 bp
ATGCATCATAGTGGACTTCCTGTAATGGAGATAAAGAAAGCTTATGATATCGAACATATGTGCTCGACGCATGGTATTCAGCATGAGTTGTGGCCTCTTGATGACGTTGATGCAAAGAAGGCAAAGTTTCCCTGTTGTTTAGTTTGGACTCCTCTTCCTGTCGTCTCTTGGTTGGCACCTTTCATTGGACATGTTGGCATTTGCAGGGAGGATGGAGTTATTTTAGATTTTGCAGGCTCCAATTTTGTGAATGTTGATGATTTTGCATTTGGTGCTGTTGCTAGATATCTTCAACTTGATAGAAAACAGTGTTGTTTTACCCCAAATCTTGGTAGCCACACTTGCAAGCATGGCTACAAGCATGCAGAGTTTGGGACTGCAATCACCTGGGATGATGCCTTGCAGTCGAGCACACGCTACATTGAGCACAAGACCTACAACCTTTTCACTTGCAACAGCCACTCTTTCGTAGCGAACTTTCTGAATCGGATATGCTACGGTGGATCAATGCATTGGAACATGATAAATGTGGCGGCTTTAGTACTGCTCAAGGGGCATTGGGTTGATGCCATGTCTGTCTTGAAGTCATTCCTCCCTTTTCTACTGGTGCTCTGCCTAGGTGTTTACATGGTTGGGTGGCCTTTCGTGGTGGCTCTTTTCTGCTTCTCTTCTCTCCTCTTGCTGTGGTTTGTACTTGGCACTTATTGTTTTAAGACCTTGTTAGAGTGCTAG

Protein Analysis

243

Amino Acids

27.51

Weight (kDa)

6.65

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTE1 PF05608 37 - 185 7.6e-72 RTE1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 329
AciI CCGC 1 cut(s) 533
AclWI GGATC 1 cut(s) 511
AfaI GTAC 2 cut(s) 543, 693
AfiI CCNNNNNNNGG 2 cut(s) 185, 329
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 293, 583
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 4 cut(s) 65, 413, 429, 612
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 511
AoxI GGCC 2 cut(s) 92, 638
Asp700I GAANNNNTTC 1 cut(s) 587
AspA2I CCTAGG 1 cut(s) 616
AsuHPI GGTGA 1 cut(s) 376
AvrII CCTAGG 1 cut(s) 616
BanI GGYRCC 1 cut(s) 175
Bbv12I GWGCWC 4 cut(s) 65, 413, 429, 612
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 3 cut(s) 282, 617, 730
BisI GCNGC 1 cut(s) 534
BlnI CCTAGG 1 cut(s) 616
BlsI GCNGC 1 cut(s) 535
BmcAI AGTACT 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 177, 238
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 4 cut(s) 13, 100, 385, 556
BpuEI CTTGAG 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 387, 616
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 329
Bse1I ACTGG 1 cut(s) 609
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 2 cut(s) 387, 616
BseGI GGATG 2 cut(s) 217, 397
BseLI CCNNNNNNNGG 2 cut(s) 185, 329
BseNI ACTGG 1 cut(s) 609
BseRI GAGGAG 2 cut(s) 141, 665
BshFI GGCC 2 cut(s) 94, 640
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 4 cut(s) 65, 413, 429, 612
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 185, 329
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 2 cut(s) 94, 640
Bsp1286I GDGCHC 4 cut(s) 65, 413, 429, 612
Bsp143I GATC 1 cut(s) 503
BspACI CCGC 1 cut(s) 533
BspANI GGCC 2 cut(s) 94, 640
BspLI GGNNCC 2 cut(s) 177, 238
BspPI GGATC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 609
BssECI CCNNGG 2 cut(s) 387, 616
BssMI GATC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 309, 500
Bst6I CTCTTC 2 cut(s) 159, 673
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 235, 347, 363
BstF5I GGATG 2 cut(s) 217, 397
BstKTI GATC 1 cut(s) 506
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 503
BstMWI GCNNNNNNNGC 5 cut(s) 119, 272, 342, 351, 553
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 2 cut(s) 194, 365
BstSCI CCNGG 1 cut(s) 386
BsuRI GGCC 2 cut(s) 94, 640
BtsCI GGATG 2 cut(s) 217, 397
BtsIMutI CAGTG 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 235, 347, 363
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 542, 692
CviAII CATG 8 cut(s) 71, 83, 191, 350, 362, 520, 571, 628
CviJI RGCY 9 cut(s) 41, 94, 237, 336, 354, 459, 536, 640, 653
CviKI_1 RGCY 9 cut(s) 41, 94, 237, 336, 354, 459, 536, 640, 653
CviQI GTAC 2 cut(s) 542, 692
DpnI GATC 1 cut(s) 505
DpnII GATC 1 cut(s) 503
Eam1104I CTCTTC 2 cut(s) 159, 673
EarI CTCTTC 2 cut(s) 159, 673
Eco130I CCWWGG 1 cut(s) 616
Eco32I GATATC 2 cut(s) 49, 287
EcoRII CCWGG 1 cut(s) 386
EcoRV GATATC 2 cut(s) 49, 287
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 2 cut(s) 6, 513
ErhI CCWWGG 1 cut(s) 616
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 8 cut(s) 74, 86, 194, 353, 365, 523, 574, 631
FaqI GGGAC 1 cut(s) 388
FatI CATG 8 cut(s) 70, 82, 190, 349, 361, 519, 570, 627
FauNDI CATATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 2 cut(s) 224, 404
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 3 cut(s) 282, 617, 730
GluI GCNGC 1 cut(s) 534
HaeIII GGCC 2 cut(s) 94, 640
HgaI GACGC 1 cut(s) 76
Hin1II CATG 8 cut(s) 74, 86, 194, 353, 365, 523, 574, 631
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 148, 484
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 14, 625
Hpy188I TCNGA 2 cut(s) 483, 489
Hpy188III TCNNGA 2 cut(s) 98, 580
Hpy8I GTNNAC 2 cut(s) 14, 625
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 309, 500
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 272, 342, 351, 553
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 8 cut(s) 74, 86, 194, 353, 365, 523, 574, 631
Kzo9I GATC 1 cut(s) 503
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 8 cut(s) 33, 145, 171, 190, 219, 373, 400, 590
LweI GCATC 4 cut(s) 13, 100, 385, 556
MaeI CTAG 3 cut(s) 282, 617, 730
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 505
MboI GATC 1 cut(s) 503
MboII GAAGA 3 cut(s) 146, 281, 660
MhlI GDGCHC 4 cut(s) 65, 413, 429, 612
MluCI AATT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 5 cut(s) 105, 162, 202, 602, 686
Mph1103I ATGCAT 2 cut(s) 6, 513
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 1 cut(s) 711
MslI CAYNNNNRTG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 5 cut(s) 119, 272, 342, 351, 553
NdeI CATATG 1 cut(s) 57
NdeII GATC 1 cut(s) 503
NlaIII CATG 8 cut(s) 74, 86, 194, 353, 365, 523, 574, 631
NlaIV GGNNCC 2 cut(s) 177, 238
NsiI ATGCAT 2 cut(s) 6, 513
NspI RCATGY 2 cut(s) 194, 365
PaeI GCATGC 1 cut(s) 365
PciI ACATGT 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 484
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 2 cut(s) 177, 238
RsaI GTAC 2 cut(s) 543, 693
RsaNI GTAC 2 cut(s) 542, 692
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 711
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 1 cut(s) 503
ScaI AGTACT 1 cut(s) 543
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 4 cut(s) 65, 413, 429, 612
SetI ASST 8 cut(s) 43, 108, 181, 389, 437, 444, 622, 719
SfaNI GCATC 4 cut(s) 13, 100, 385, 556
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SphI GCATGC 1 cut(s) 365
Sse9I AATT 1 cut(s) 241
SsiI CCGC 1 cut(s) 533
SspMI CTAG 3 cut(s) 282, 617, 730
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 309, 500
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 51, 65, 407
TasI AATT 1 cut(s) 241
TatI WGTACW 2 cut(s) 541, 691
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TscAI CASTG 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 1 cut(s) 314
Van91I CCANNNNNTGG 1 cut(s) 329
XceI RCATGY 2 cut(s) 194, 365
XmaJI CCTAGG 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 3 cut(s) 282, 617, 730
ZrmI AGTACT 1 cut(s) 543
Zsp2I ATGCAT 2 cut(s) 6, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.