Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Reverse (-)

52897791 .. 52905001

Gene Structure 7211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0383500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3171 bp

ATGTCTAATCTCAGTGAAGATCTTGTGTTCTTGATCTTAAAGTATTTGGATGAGGAAGGTTATAAGGAAGCCGCCCACATGCTTGAGCGTGAAAGTGGGCTTTACTTTGACATGAATTATTTTGAAGAGCTGGTGCTTAGTGGAAAATGGGATGAAGCAGAGAAATACCTCGCCGGCTTCACAAAGCTCGATGACAATAAGTACTCGACTAAGATCTACTTTGAAATCAGGAAGCAACATTACTTTGAGGCACTTGACAAAAAATGTCGTGCCGAGGCTTTAGATGTCCTCACAAATGATCTACAAGTTTTTGCTAAAGGTAATGAAGAGCTATTCAAAGAAATGACTCAACTTATGACATTTGAGAATATAAGGGAACATGAGTCACTCTCTATGTATAGAGATACAAAGTCTGCAAGGAAGGTTATGATGAAAGAAATCAGGAGGGTAATTGAGGCAAATCCAATTTTCCGTGGTAGACTGAAATTTCCTATCGTAAAAGGCGAGAGATTACGGCGTCTGATTAACCAAAGCTTGAATTGGCAGCATATGCAATGTGAAGATCCTCATCCAAATCCAGCCATTGACACCCTTTTTATTGATCATGTTTGTGACCCACAGGTCTGTATACAACATTCTCCATCAATTGAAAATAATGCAAAACCTTCCCGGACCACATCATATCAATCTCCAACTTGTTCTGTGAAGTCAAGTCTATCTACCATTGCACAATATGCATCGTGTATTGGAGGATCTTTCCCTGCAAAGAACCCAGCTACTGAGGTTATTGAGGATTCTGATGTTTTATCCAAAAGGATGCCCATTGTAACTGGGGATGAGGTAACGTCAACTATCACTGATCATGGCCAAAATCAGATCTCGGAACTTGCCATATCCAAAAATCTTCCCAGTACTGTTGTCCGTACATTGAATGAGGGGTCTTCTCCAGTGAGCATGGATTTTCATCCCATTTGGCTTACTGTTCTTCTAGTTGGAACTTCTGCTGGGGAAATAGGACTGTGGGATATTAACTGCGGTGGAAAAATGGTTGCCAGAAACTTTAATGTTTGGGATCTTGGAGCATGCTCGATGGCCTTAAAGGTAGCACTAGAAAAAGATTCACATGTCTCTGTTAATCGTGTGTTATGGAGTCCGGATGGTTTCTTATTTGGGGTTGCATATTCAAAACATGTTGTGCAATTGTATTCTTATATTGGAGGAGATGAACTGGATCAAATATTGGAAATTGATGCTCATTTGGGTGGTGTAAATGATTTAGCATTCTCTTCTCCTGAAGGGGAACTTTTGGTCATAACATGTGGTGATGACAGGACCATCAAGGTGTGGGATGTGGTTAGTGGTAACCGATGCTTTACTTTTGAAGGTCATGATGCTCCTGTTTATTCCATCTGTCCTCATATCAAAGATAATATCCCTTTTATCTTTTCAGTCTCAACAGTTGGCAGGATCAAAGTGTGGTTATATGACAATTTAGGAGACAGAATTGATTATGATGCTCCTGGTCTTGGTTGCACCAAAATGGCTTACAGTGCTGATGAGAGGCTTTTTTCATGTGGAACCAGTAAAAGAGGGGAATCATATCTTGTCGAATGGGATGATACTGTTGGTTGTTTCAAAAGAGTTTACAAAGGACTTGGGCCAAACCCATTGTCTGCCGTGCAATTCGATATAACCAGGAACCAGCTTTTGGCTGCTGGTGATGACCATATGGTTAAATTTTGGCATATGGACAACACTCAACTTTTGAATACCATTGATGCTGATGGTGGATTGCCAGCAAATCCACATATTCGCTTCAACAGTGATGGCACCCTATTAGCTGTTTCTTCAAGTGGAAACCAAATCAAGATACTGGCAAATGCTAATGGTCTTGATTTGCTGCAAGGATGTGGGAATGATTCTATCGATGCCTCTGGAGTTGAATCTGAAACTTCAAGAAAGAATGGGAATGTGGCAGAAGTGAATTCAAAAACAACAGGAGAAGCCACTTACGGAGAAAAGGCATGGGAAACTATTGAGAGACCTTCTCAATGCCAATCTTTGCAGCTATGTGCTGATGTCAAAAGAACCAAGATATCCAAGCTGATCTACACCAATGCCGGTGATGCCATTTTGGCATTAACATCAAATGCCATTCATCTACTCTGGAAATGGCCGCAGAACGATCTTAGTTCTAGTGGAAAGGCAACTACCAAGGTTCAACCTCTTTTATGGCGACCAACGAGTGGCTTACAGCTGATGAGCAATGACCTTTCCAGCACCAACCCTGAAGAGGCCATGCCATGCTTTGCTTTGTCCAAGAATGATTCATATCTTATGTCAGCATCAGGAGGGATGATCTCCCTTTTTAATGTTATATCGTTTAAGACAATGAGGAAAGTCATGGCTCCACCACCTGCAGCAACATGCCTTGCTTTTGATCCTCGAGACAACAATGTAGTTGCTATTGGCATGGATGATTCCACAATTATGATATATAATGCTCGCTTGGATAAGGTCACAAAAACGCTTGCTGGTCACACCAAAAGAGTCACTTCCCTTGCCTTCTCTACCTCTATGAAATCACTTGTTTCTTCTGGTGCTGATGCTCAGATTTTTGTGTGGAATGCTGATGAGTGGAAAATACAGAGAAGCCAAGTGCTGCAGATTCCAGATTGGAACAAATTGAGAGCATTATCAGACTCAGATACCCATGTCCAGTTTCACAAGGATCAGCTGCATTTCCTAATCGTACACAAGAATCACCTTGCAATATACGAAGTGAAAGAACTAGGATGTGTAAACGAGTGGGTCTCAGATTCTTCTGTACCAATTTCCCATGCAACGTTCTCATGTGATAGCCAGACAGTATATGCCAGCTTTGTGGATGGAACCATAGGCATATTTGACGCTTCTGTTCTTGTACTATGCTGTCTAATCAAGCCCTCCGCTTACCTTCCTACCGATATAAGTTATACTGTGTACCCAGTCGTCATTGCTGGGCATCCACAAAAACCAACCCAGTTTGCCGTTGGACTCTCTAATGGTGAAGTTCATGTGCTTGAGCCTTTAGAATCAGAAGGCAAATGGGGTATATTGCCAACGGTTAAAAGGAATTTGGAGAGCAGTGCGCCTGCAAAATCTACCTTTCGGGGCTTCTTGTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009966 GO:0009968 GO:0010033 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070297 GO:0070298 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

1056

Amino Acids

117.15

Weight (kDa)

5.48

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 33	2.2e-06	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	38 - 161	1.7e-53	TPR1-like, CTLH-containing domain
zf_topless	PF21359	164 - 204	2.4e-21	TOPLESS, zinc finger domain
Beta-prop_WDR3_2nd	PF25172	275 - 517	6.9e-06	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	353 - 495	4.7e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	354 - 470	8.8e-12	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	376 - 493	4.7e-13	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	391 - 496	2.2e-08	WDHD1 first WD40 domain
WD40	PF00400	413 - 450	7.5e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	436 - 624	1.1e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	513 - 630	2.3e-07	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	756 - 972	5e-18	WDHD1 first WD40 domain
WDR55	PF24796	757 - 877	8.1e-07	WDR55
Beta-prop_EML_2	PF23414	760 - 895	1.9e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	762 - 881	2.6e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	765 - 971	1.8e-20	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	769 - 967	1.1e-13	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	772 - 881	1.2e-12	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	780 - 882	3.3e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	780 - 877	7.7e-15	WDR3 first beta-propeller domain
Beta-prop_IFT140_1st	PF23383	781 - 888	2.9e-08	IFT140 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	783 - 877	2.9e-09	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	805 - 971	2.2e-16	Prp19 WD40 domain
Beta-prop_WDR19_1st	PF23389	808 - 930	5e-07	WDR19 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	811 - 876	6.3e-07	MABP1/WDR62 second WD40 domain
WD40	PF00400	840 - 876	3.2e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	1 cut(s)	2425
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	2425
AccB1I	GGYRCC	1 cut(s)	1829
AccB7I	CCANNNNNTGG	2 cut(s)	1708, 2246
AccI	GTMKAC	2 cut(s)	478, 628
AccIII	TCCGGA	1 cut(s)	1153
AciI	CCGC	4 cut(s)	72, 1035, 2177, 2949
AclI	AACGTT	1 cut(s)	2846
AclWI	GGATC	7 cut(s)	557, 760, 1080, 1239, 1475, 2435, 2739
AcoI	YGGCCR	2 cut(s)	865, 2174
AcsI	RAATTY	4 cut(s)	485, 1736, 1984, 3115
AcuI	CTGAAG	2 cut(s)	1314, 2310
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	7 cut(s)	203, 913, 925, 2754, 2829, 2925, 2984
AfiI	CCNNNNNNNGG	4 cut(s)	1526, 1708, 2246, 2293
AflIII	ACRYGT	3 cut(s)	1123, 1189, 1316
AjnI	CCWGG	2 cut(s)	1519, 1694
AjuI	GAANNNNNNNTTGG	2 cut(s)	1691, 1723
Alw26I	GTCTC	6 cut(s)	1132, 1456, 1491, 2035, 2442, 2818
AlwI	GGATC	7 cut(s)	557, 760, 1080, 1239, 1475, 2435, 2739
AlwNI	CAGNNNCTG	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	2445
Aor13HI	TCCGGA	1 cut(s)	1153
AoxI	GGCC	5 cut(s)	865, 1092, 1658, 2174, 2295
ApeKI	GCWGC	7 cut(s)	544, 1712, 1900, 2065, 2420, 2662, 2737
ApoI	RAATTY	4 cut(s)	485, 1736, 1984, 3115
ArsI	GACNNNNNNTTYG	2 cut(s)	1655, 1687
AspLEI	GCGC	1 cut(s)	3133
AspS9I	GGNCC	3 cut(s)	672, 1332, 1658
AsuC2I	CCSGG	1 cut(s)	670
AsuHPI	GGTGA	5 cut(s)	1334, 1730, 2135, 2756, 3059
AvaI	CYCGRG	1 cut(s)	2445
AvaII	GGWCC	2 cut(s)	672, 1332
BaeI	ACNNNNGTAYC	2 cut(s)	2700, 2733
BalI	TGGCCA	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	1829
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	1 cut(s)	933
BbvI	GCAGC	7 cut(s)	556, 1699, 1887, 2077, 2432, 2649, 2724
BccI	CCATC	8 cut(s)	649, 1084, 1151, 1343, 1415, 1778, 1820, 2882
BceAI	ACGGC	3 cut(s)	530, 1661, 3014
BciT130I	CCWGG	2 cut(s)	1521, 1696
BclI	TGATCA	2 cut(s)	601, 859
BcnI	CCSGG	1 cut(s)	670
BcoDI	GTCTC	6 cut(s)	1132, 1456, 1491, 2035, 2442, 2818
BfaI	CTAG	4 cut(s)	989, 1109, 2196, 2792
BfmI	CTRYAG	2 cut(s)	2418, 2663
BfuAI	ACCTGC	1 cut(s)	2425
BglI	GCCNNNNNGGC	1 cut(s)	2135
BglII	AGATCT	3 cut(s)	19, 213, 876
BisI	GCNGC	9 cut(s)	72, 545, 1713, 1901, 2066, 2177, 2421, 2663, 2738
BlsI	GCNGC	9 cut(s)	73, 546, 1714, 1902, 2067, 2178, 2422, 2664, 2739
BmcAI	AGTACT	2 cut(s)	203, 913
Bme1390I	CCNGG	3 cut(s)	670, 1521, 1696
Bme18I	GGWCC	2 cut(s)	672, 1332
BmeT110I	CYCGRG	1 cut(s)	2445
BmgT120I	GGNCC	3 cut(s)	672, 1332, 1658
BmiI	GGNNCC	5 cut(s)	1579, 1700, 1831, 2409, 2893
BmrFI	CCNGG	3 cut(s)	670, 1521, 1696
BmrI	ACTGGG	4 cut(s)	840, 903, 2981, 3016
BmuI	ACTGGG	4 cut(s)	840, 903, 2981, 3016
BpiI	GAAGAC	1 cut(s)	933
BplI	GAGNNNNNCTC	6 cut(s)	374, 406, 2032, 2064, 2798, 2830
BpmI	CTGGAG	2 cut(s)	930, 1956
BpuEI	CTTGAG	2 cut(s)	104, 3083
BpuMI	CCSGG	1 cut(s)	670
Bsa29I	ATCGAT	1 cut(s)	1926
BsaBI	GATNNNNATC	3 cut(s)	567, 963, 2331
BsaHI	GRCGYC	1 cut(s)	517
BsaI	GGTCTC	2 cut(s)	2035, 2818
BsaJI	CCNNGG	3 cut(s)	273, 472, 2214
BsaWI	WCCGGW	1 cut(s)	1153
Bsc4I	CCNNNNNNNGG	4 cut(s)	1526, 1708, 2246, 2293
Bse118I	RCCGGY	2 cut(s)	173, 2120
Bse1I	ACTGG	9 cut(s)	835, 909, 947, 1233, 1581, 1878, 2719, 2987, 3022
Bse3DI	GCAATG	4 cut(s)	560, 723, 2272, 2994
Bse8I	GATNNNNATC	3 cut(s)	567, 963, 2331
BseAI	TCCGGA	1 cut(s)	1153
BseBI	CCWGG	2 cut(s)	1521, 1696
BseCI	ATCGAT	1 cut(s)	1926
BseDI	CCNNGG	3 cut(s)	273, 472, 2214
BseJI	GATNNNNATC	3 cut(s)	567, 963, 2331
BseLI	CCNNNNNNNGG	4 cut(s)	1526, 1708, 2246, 2293
BseMI	GCAATG	4 cut(s)	560, 723, 2272, 2994
BseMII	CTCAG	5 cut(s)	25, 771, 2624, 2718, 2829
BseNI	ACTGG	9 cut(s)	835, 909, 947, 1233, 1581, 1878, 2719, 2987, 3022
BseRI	GAGGAG	1 cut(s)	1233
BseXI	GCAGC	7 cut(s)	556, 1699, 1887, 2077, 2432, 2649, 2724
BseYI	CCCAGC	3 cut(s)	772, 1004, 2999
BshFI	GGCC	5 cut(s)	867, 1094, 1660, 2176, 2297
BshNI	GGYRCC	1 cut(s)	1829
BshVI	ATCGAT	1 cut(s)	1926
BsiHKCI	CYCGRG	1 cut(s)	2445
BsiSI	CCGG	4 cut(s)	174, 670, 1154, 2121
BslI	CCNNNNNNNGG	4 cut(s)	1526, 1708, 2246, 2293
BsmAI	GTCTC	6 cut(s)	1132, 1456, 1491, 2035, 2442, 2818
BsmI	GAATGC	2 cut(s)	1280, 2632
BsnI	GGCC	5 cut(s)	867, 1094, 1660, 2176, 2297
Bso31I	GGTCTC	2 cut(s)	2035, 2818
BsoBI	CYCGRG	1 cut(s)	2445
Bsp13I	TCCGGA	1 cut(s)	1153
BspACI	CCGC	4 cut(s)	72, 1035, 2177, 2949
BspANI	GGCC	5 cut(s)	867, 1094, 1660, 2176, 2297
BspCNI	CTCAG	5 cut(s)	24, 772, 2623, 2717, 2828
BspDI	ATCGAT	1 cut(s)	1926
BspEI	TCCGGA	1 cut(s)	1153
BspHI	TCATGA	1 cut(s)	1387
BspLI	GGNNCC	5 cut(s)	1579, 1700, 1831, 2409, 2893
BspMAI	CTGCAG	2 cut(s)	2422, 2667
BspMI	ACCTGC	1 cut(s)	2425
BspPI	GGATC	7 cut(s)	557, 760, 1080, 1239, 1475, 2435, 2739
BspQI	GCTCTTC	2 cut(s)	120, 321
BspT107I	GGYRCC	1 cut(s)	1829
BspTNI	GGTCTC	2 cut(s)	2035, 2818
BsrDI	GCAATG	4 cut(s)	560, 723, 2272, 2994
BsrFI	RCCGGY	2 cut(s)	173, 2120
BsrI	ACTGG	9 cut(s)	835, 909, 947, 1233, 1581, 1878, 2719, 2987, 3022
BssAI	RCCGGY	2 cut(s)	173, 2120
BssECI	CCNNGG	3 cut(s)	273, 472, 2214
BssNAI	GTATAC	1 cut(s)	629
BssNI	GRCGYC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	2214
Bst1107I	GTATAC	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	1521, 1696
Bst6I	CTCTTC	4 cut(s)	120, 321, 1291, 2286
BstACI	GRCGYC	1 cut(s)	517
BstAPI	GCANNNNNTGC	2 cut(s)	550, 734
BstC8I	GCNNGC	7 cut(s)	175, 1084, 1797, 2506, 2532, 2878, 3135
BstDEI	CTNAG	8 cut(s)	11, 137, 210, 780, 2189, 2610, 2704, 2815
BstDSI	CCRYGG	1 cut(s)	472
BstEII	GGTNACC	1 cut(s)	1361
BstHHI	GCGC	1 cut(s)	3133
BstMAI	GTCTC	6 cut(s)	1132, 1456, 1491, 2035, 2442, 2818
BstMWI	GCNNNNNNNGC	5 cut(s)	550, 734, 1550, 2126, 2135
BstNI	CCWGG	2 cut(s)	1521, 1696
BstNSI	RCATGY	6 cut(s)	82, 1086, 1127, 1193, 1320, 2430
BstPI	GGTNACC	1 cut(s)	1361
BstSCI	CCNGG	3 cut(s)	668, 1519, 1694
BstSFI	CTRYAG	2 cut(s)	2418, 2663
BstV1I	GCAGC	7 cut(s)	556, 1699, 1887, 2077, 2432, 2649, 2724
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	6 cut(s)	19, 213, 562, 752, 876, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	2884
BstYI	RGATCY	6 cut(s)	19, 213, 562, 752, 876, 1072
BstZ17I	GTATAC	1 cut(s)	629
Bsu15I	ATCGAT	1 cut(s)	1926
BsuRI	GGCC	5 cut(s)	867, 1094, 1660, 2176, 2297
BsuTUI	ATCGAT	1 cut(s)	1926
BtgI	CCRYGG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	3133
BtsIMutI	CAGTG	6 cut(s)	19, 855, 954, 1555, 1828, 3133
BveI	ACCTGC	1 cut(s)	2425
Cac8I	GCNNGC	7 cut(s)	175, 1084, 1797, 2506, 2532, 2878, 3135
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	1 cut(s)	1387
CfoI	GCGC	1 cut(s)	3133
Cfr10I	RCCGGY	2 cut(s)	173, 2120
Cfr13I	GGNCC	3 cut(s)	672, 1332, 1658
ClaI	ATCGAT	1 cut(s)	1926
CseI	GACGC	2 cut(s)	506, 2918
Csp6I	GTAC	7 cut(s)	202, 912, 924, 2753, 2828, 2924, 2983
CviQI	GTAC	7 cut(s)	202, 912, 924, 2753, 2828, 2924, 2983
DdeI	CTNAG	8 cut(s)	11, 137, 210, 780, 2189, 2610, 2704, 2815
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
EaeI	YGGCCR	2 cut(s)	865, 2174
Eam1104I	CTCTTC	4 cut(s)	120, 321, 1291, 2286
EarI	CTCTTC	4 cut(s)	120, 321, 1291, 2286
Eco130I	CCWWGG	1 cut(s)	2214
Eco31I	GGTCTC	2 cut(s)	2035, 2818
Eco32I	GATATC	1 cut(s)	2097
Eco47I	GGWCC	2 cut(s)	672, 1332
Eco57I	CTGAAG	2 cut(s)	1314, 2310
Eco88I	CYCGRG	1 cut(s)	2445
Eco91I	GGTNACC	1 cut(s)	1361
EcoO65I	GGTNACC	1 cut(s)	1361
EcoRI	GAATTC	1 cut(s)	1984
EcoRII	CCWGG	2 cut(s)	1519, 1694
EcoRV	GATATC	1 cut(s)	2097
EcoT14I	CCWWGG	1 cut(s)	2214
EcoT22I	ATGCAT	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	2214
FalI	AAGNNNNNCTT	6 cut(s)	203, 235, 1287, 1319, 2539, 2571
FauNDI	CATATG	3 cut(s)	549, 1728, 1746
FbaI	TGATCA	2 cut(s)	601, 859
FblI	GTMKAC	2 cut(s)	478, 628
Fnu4HI	GCNGC	9 cut(s)	72, 545, 1713, 1901, 2066, 2177, 2421, 2663, 2738
Fsp4HI	GCNGC	9 cut(s)	72, 545, 1713, 1901, 2066, 2177, 2421, 2663, 2738
FspBI	CTAG	4 cut(s)	989, 1109, 2196, 2792
GlaI	GCGC	1 cut(s)	3132
GluI	GCNGC	9 cut(s)	72, 545, 1713, 1901, 2066, 2177, 2421, 2663, 2738
GsaI	CCCAGC	3 cut(s)	776, 1008, 3003
GsuI	CTGGAG	2 cut(s)	930, 1956
HaeIII	GGCC	5 cut(s)	867, 1094, 1660, 2176, 2297
HapII	CCGG	4 cut(s)	174, 670, 1154, 2121
HgaI	GACGC	2 cut(s)	506, 2918
HhaI	GCGC	1 cut(s)	3133
Hin1I	GRCGYC	1 cut(s)	517
Hin6I	GCGC	1 cut(s)	3131
HinP1I	GCGC	1 cut(s)	3131
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	532
HpaII	CCGG	4 cut(s)	174, 670, 1154, 2121
HphI	GGTGA	5 cut(s)	1334, 1730, 2135, 2756, 3059
Hpy166II	GTNNAC	7 cut(s)	479, 629, 849, 1645, 2755, 2803, 2983
Hpy8I	GTNNAC	7 cut(s)	479, 629, 849, 1645, 2755, 2803, 2983
HpyAV	CCTTC	9 cut(s)	50, 415, 675, 1289, 1376, 2055, 2575, 2966, 3074
HpyCH4IV	ACGT	2 cut(s)	845, 2846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	550, 734, 1550, 2126, 2135
HpyF3I	CTNAG	8 cut(s)	11, 137, 210, 780, 2189, 2610, 2704, 2815
HpySE526I	ACGT	2 cut(s)	845, 2846
Hsp92I	GRCGYC	1 cut(s)	517
HspAI	GCGC	1 cut(s)	3131
Kpn2I	TCCGGA	1 cut(s)	1153
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Ksp22I	TGATCA	2 cut(s)	601, 859
LguI	GCTCTTC	2 cut(s)	120, 321
LmnI	GCTCC	4 cut(s)	1079, 1399, 1522, 2413
Lsp1109I	GCAGC	7 cut(s)	556, 1699, 1887, 2077, 2432, 2649, 2724
MaeI	CTAG	4 cut(s)	989, 1109, 2196, 2792
MaeII	ACGT	2 cut(s)	845, 2846
MaeIII	GTNAC	8 cut(s)	384, 611, 826, 841, 1361, 2518, 2537, 2551
MfeI	CAATTG	2 cut(s)	645, 1199
MflI	RGATCY	6 cut(s)	19, 213, 562, 752, 876, 1072
MlsI	TGGCCA	1 cut(s)	867
MluNI	TGGCCA	1 cut(s)	867
MlyI	GAGTC	6 cut(s)	340, 392, 1159, 2559, 2696, 3030
MmeI	TCCRAC	3 cut(s)	716, 973, 3013
Mox20I	TGGCCA	1 cut(s)	867
Mph1103I	ATGCAT	1 cut(s)	739
MroI	TCCGGA	1 cut(s)	1153
MroNI	GCCGGC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	867
MslI	CAYNNNNRTG	5 cut(s)	609, 1260, 1340, 1538, 2489
Msp20I	TGGCCA	1 cut(s)	867
MspA1I	CMGCKG	2 cut(s)	2257, 2737
MspI	CCGG	4 cut(s)	174, 670, 1154, 2121
MspR9I	CCNGG	3 cut(s)	670, 1521, 1696
MunI	CAATTG	2 cut(s)	645, 1199
Mva1269I	GAATGC	2 cut(s)	1280, 2632
MvaI	CCWGG	2 cut(s)	1521, 1696
MwoI	GCNNNNNNNGC	5 cut(s)	550, 734, 1550, 2126, 2135
NaeI	GCCGGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	670
NdeI	CATATG	3 cut(s)	549, 1728, 1746
NgoMIV	GCCGGC	1 cut(s)	173
NlaIV	GGNNCC	5 cut(s)	1579, 1700, 1831, 2409, 2893
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	5 cut(s)	384, 611, 2518, 2537, 2551
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	6 cut(s)	82, 1086, 1127, 1193, 1320, 2430
PaeI	GCATGC	1 cut(s)	1086
PaeR7I	CTCGAG	1 cut(s)	2445
PagI	TCATGA	1 cut(s)	1387
PaqCI	CACCTGC	1 cut(s)	2425
PciI	ACATGT	3 cut(s)	1123, 1189, 1316
PciSI	GCTCTTC	2 cut(s)	120, 321
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PctI	GAATGC	2 cut(s)	1280, 2632
PdiI	GCCGGC	1 cut(s)	175
PflMI	CCANNNNNTGG	2 cut(s)	1708, 2246
PfoI	TCCNGGA	1 cut(s)	668
PkrI	GCNGC	9 cut(s)	73, 546, 1714, 1902, 2067, 2178, 2422, 2664, 2739
PleI	GAGTC	6 cut(s)	340, 391, 1158, 2558, 2696, 3030
PpsI	GAGTC	6 cut(s)	340, 391, 1158, 2558, 2696, 3030
PscI	ACATGT	3 cut(s)	1123, 1189, 1316
PsiI	TTATAA	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	2846
Psp6I	CCWGG	2 cut(s)	1519, 1694
PspEI	GGTNACC	1 cut(s)	1361
PspFI	CCCAGC	3 cut(s)	772, 1004, 2999
PspGI	CCWGG	2 cut(s)	1519, 1694
PspN4I	GGNNCC	5 cut(s)	1579, 1700, 1831, 2409, 2893
PspPI	GGNCC	3 cut(s)	672, 1332, 1658
PstI	CTGCAG	2 cut(s)	2422, 2667
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	6 cut(s)	19, 213, 562, 752, 876, 1072
PvuII	CAGCTG	2 cut(s)	2257, 2737
RsaI	GTAC	7 cut(s)	203, 913, 925, 2754, 2829, 2925, 2984
RsaNI	GTAC	7 cut(s)	202, 912, 924, 2753, 2828, 2924, 2983
RseI	CAYNNNNRTG	5 cut(s)	609, 1260, 1340, 1538, 2489
SapI	GCTCTTC	2 cut(s)	120, 321
SatI	GCNGC	9 cut(s)	72, 545, 1713, 1901, 2066, 2177, 2421, 2663, 2738
Sau96I	GGNCC	3 cut(s)	672, 1332, 1658
ScaI	AGTACT	2 cut(s)	203, 913
SchI	GAGTC	6 cut(s)	340, 392, 1159, 2559, 2696, 3030
ScrFI	CCNGG	3 cut(s)	670, 1521, 1696
SfcI	CTRYAG	2 cut(s)	2418, 2663
Sfr274I	CTCGAG	1 cut(s)	2445
SinI	GGWCC	2 cut(s)	672, 1332
SlaI	CTCGAG	1 cut(s)	2445
SmiMI	CAYNNNNRTG	5 cut(s)	609, 1260, 1340, 1538, 2489
SmlI	CTYRAG	3 cut(s)	83, 2445, 3062
SmoI	CTYRAG	3 cut(s)	83, 2445, 3062
SphI	GCATGC	1 cut(s)	1086
SsiI	CCGC	4 cut(s)	72, 1035, 2177, 2949
SspI	AATATT	1 cut(s)	1239
SspMI	CTAG	4 cut(s)	989, 1109, 2196, 2792
StyD4I	CCNGG	3 cut(s)	668, 1519, 1694
StyI	CCWWGG	1 cut(s)	2214
TaiI	ACGT	2 cut(s)	848, 2849
TaqI	TCGA	7 cut(s)	189, 206, 1088, 1608, 1686, 1926, 2446
TatI	WGTACW	3 cut(s)	201, 911, 2923
TauI	GCSGC	2 cut(s)	74, 2179
TscAI	CASTG	6 cut(s)	19, 862, 954, 1555, 1828, 3133
TseFI	GTSAC	5 cut(s)	384, 611, 2518, 2537, 2551
TseI	GCWGC	7 cut(s)	544, 1712, 1900, 2065, 2420, 2662, 2737
Tsp45I	GTSAC	5 cut(s)	384, 611, 2518, 2537, 2551
TspGWI	ACGGA	3 cut(s)	461, 911, 2028
TspRI	CASTG	6 cut(s)	19, 862, 954, 1555, 1828, 3133
Van91I	CCANNNNNTGG	2 cut(s)	1708, 2246
VpaK11BI	GGWCC	2 cut(s)	672, 1332
XapI	RAATTY	4 cut(s)	485, 1736, 1984, 3115
XceI	RCATGY	6 cut(s)	82, 1086, 1127, 1193, 1320, 2430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3029
XhoI	CTCGAG	1 cut(s)	2445
XmiI	GTMKAC	2 cut(s)	478, 628
XspI	CTAG	4 cut(s)	989, 1109, 2196, 2792
ZrmI	AGTACT	2 cut(s)	203, 913
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.