Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Reverse (-)

35980053 .. 35982333

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G412500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGACAAGCCAAGCCGAGCTGTGGTTTTGTACGGAGATGGGTTGGTCCGTTTCGTCGACCCATCACACATCCATCTCCACTCTCTCGCTTCTAAAGCTTCCTGTGGCTTCTTGAGCCTCCCCATTGCCCCTCCCTCAGAAAGCGAGGATGAGAGAATAGTCAGAGAGTTTGCATTACTGCTGGATGCATATGAAGCATACCATGATACAGTGAGATCCACATCTTTGGTTATCATATCAGAAAGGTTCATGGGGATGAAAGCTGCGATATTTACAAACAATGCAAGTTTGAAATCTTTTGGTACCAAACTTGGTTTCAGCGTGTTCCAAATCGATGCTCTTTATAAAAACAGTCCAGCCGGTGCTGAACCGCCAGTTGATTTTGGGGCATCTGAGTTACTTAAGTTGCTTGGGTTTCAAGTAGGGAAGACAGTGGAGACGAGCCAGTATGATTTAGTTTTTGTGCATGTTGGGGCTGGTGAGGTGAATGTTGAGAAAGACAAGGCTACTGATGATGTGGGATATCTCAATGCTTTGGTTGGTGCTATAACGCAAATAGCCCAACCTGGATCTGAAATCGGTGCCCGTTTGCACTTGTCTGTTGTGACGAGCTATGGGAAGGTCTCAGAAAAGGATGATCCCAACTTGTTAGTCTCATTTAGAAAAGATGATGAAAAATCTGATCTTTCAAAGCTTGTTCCTCGTCAAAGTTACACCATGAAAGGATCTCAACCACGAAAGGATGTTAGGCACCATTGCCCAATGTTAATTGCTCAGTGGCAATATGCAGTAACTCGCAAGGATATGGCTGAGACATTCTCATTTAAGGATTTCAAAGAGTACGGTGGAAATCTTGTGATACCAGCGGATAGGTTTCTGCACGAAGTGGCCTTCAAGCTTTGGAAGGCCCCGAAATATGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.1

Weight (kDa)

6.51

Isoelectric Point (pI)

23.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	3 cut(s)	305, 584, 753
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	3 cut(s)	5, 374, 869
AclWI	GGATC	4 cut(s)	213, 580, 635, 736
AdeI	CACNNNGTG	1 cut(s)	889
AfaI	GTAC	3 cut(s)	35, 307, 845
AfiI	CCNNNNNNNGG	2 cut(s)	25, 920
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	5 cut(s)	295, 422, 693, 838, 898
AjnI	CCWGG	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	7 cut(s)	23, 101, 266, 615, 697, 901, 926
AluI	AGCT	7 cut(s)	23, 101, 266, 615, 697, 901, 926
Alw26I	GTCTC	4 cut(s)	434, 631, 661, 809
AlwI	GGATC	4 cut(s)	213, 580, 635, 736
AoxI	GGCC	2 cut(s)	891, 909
ApeKI	GCWGC	1 cut(s)	266
Asp718I	GGTACC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	49, 910
AsuHPI	GGTGA	2 cut(s)	494, 499
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	589
BanI	GGYRCC	3 cut(s)	305, 584, 753
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	35, 73, 84
BciT130I	CCWGG	1 cut(s)	570
BcoDI	GTCTC	4 cut(s)	434, 631, 661, 809
BfrI	CTTAAG	1 cut(s)	404
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	49, 910
BmiI	GGNNCC	4 cut(s)	307, 586, 755, 912
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	3 cut(s)	178, 328, 401
BpiI	GAAGAC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BpuEI	CTTGAG	1 cut(s)	136
Bsa29I	ATCGAT	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 920
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	377, 448
Bse3DI	GCAATG	2 cut(s)	126, 757
Bse8I	GATNNNNATC	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	570
BseCI	ATCGAT	1 cut(s)	336
BseGI	GGATG	6 cut(s)	72, 157, 193, 264, 643, 751
BseJI	GATNNNNATC	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	25, 920
BseMI	GCAATG	2 cut(s)	126, 757
BseMII	CTCAG	5 cut(s)	153, 387, 642, 791, 804
BseNI	ACTGG	2 cut(s)	377, 448
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	866
BshFI	GGCC	2 cut(s)	893, 911
BshNI	GGYRCC	3 cut(s)	305, 584, 753
BshVI	ATCGAT	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	25, 920
BsmAI	GTCTC	4 cut(s)	434, 631, 661, 809
BsmBI	CGTCTC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	893, 911
Bso31I	GGTCTC	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	5 cut(s)	218, 572, 640, 685, 728
BspACI	CCGC	3 cut(s)	5, 374, 869
BspANI	GGCC	2 cut(s)	893, 911
BspCNI	CTCAG	5 cut(s)	152, 388, 641, 790, 805
BspDI	ATCGAT	1 cut(s)	336
BspLI	GGNNCC	4 cut(s)	307, 586, 755, 912
BspPI	GGATC	4 cut(s)	213, 580, 635, 736
BspT107I	GGYRCC	3 cut(s)	305, 584, 753
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	631
BsrDI	GCAATG	2 cut(s)	126, 757
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	377, 448
BssAI	RCCGGY	1 cut(s)	362
BssMI	GATC	5 cut(s)	218, 572, 640, 685, 728
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	4 cut(s)	214, 356, 436, 848
BstAFI	CTTAAG	1 cut(s)	404
BstDEI	CTNAG	5 cut(s)	139, 396, 628, 777, 813
BstF5I	GGATG	6 cut(s)	72, 157, 193, 264, 643, 751
BstKTI	GATC	5 cut(s)	221, 575, 643, 688, 731
BstMAI	GTCTC	4 cut(s)	434, 631, 661, 809
BstMBI	GATC	5 cut(s)	218, 572, 640, 685, 728
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 117, 197
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	568
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	3 cut(s)	218, 572, 728
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	218, 572, 728
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	893, 911
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	6 cut(s)	72, 157, 193, 264, 643, 751
BtsIMutI	CAGTG	3 cut(s)	219, 441, 785
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	49, 910
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	34, 306, 844
CviAII	CATG	4 cut(s)	206, 253, 470, 721
CviQI	GTAC	3 cut(s)	34, 306, 844
DdeI	CTNAG	5 cut(s)	139, 396, 628, 777, 813
DpnI	GATC	5 cut(s)	220, 574, 642, 687, 730
DpnII	GATC	5 cut(s)	218, 572, 640, 685, 728
DraIII	CACNNNGTG	1 cut(s)	889
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	631
Eco32I	GATATC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	910
EcoRII	CCWGG	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	4 cut(s)	209, 256, 473, 724
FatI	CATG	4 cut(s)	205, 252, 469, 720
FauNDI	CATATG	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	6 cut(s)	59, 164, 200, 271, 650, 758
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	893, 911
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	4 cut(s)	209, 256, 473, 724
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	3 cut(s)	99, 695, 899
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	2 cut(s)	494, 499
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	7 cut(s)	142, 167, 244, 397, 577, 631, 685
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	616, 901, 904
HpyCH4III	ACNGT	4 cut(s)	214, 356, 436, 848
HpyCH4V	TGCA	7 cut(s)	176, 191, 287, 469, 595, 791, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 117, 197
HpyF3I	CTNAG	5 cut(s)	139, 396, 628, 777, 813
Hsp92II	CATG	4 cut(s)	209, 256, 473, 724
KpnI	GGTACC	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	218, 572, 640, 685, 728
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	178, 328, 401
MaeIII	GTNAC	4 cut(s)	399, 607, 713, 793
MalI	GATC	5 cut(s)	220, 574, 642, 687, 730
MboI	GATC	5 cut(s)	218, 572, 640, 685, 728
MboII	GAAGA	1 cut(s)	442
MflI	RGATCY	3 cut(s)	218, 572, 728
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	1 cut(s)	771
MnlI	CCTC	6 cut(s)	131, 142, 144, 148, 478, 714
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	3 cut(s)	405, 770, 828
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	869
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	98, 117, 197
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	5 cut(s)	218, 572, 640, 685, 728
NlaIII	CATG	4 cut(s)	209, 256, 473, 724
NlaIV	GGNNCC	4 cut(s)	307, 586, 755, 912
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	4 cut(s)	307, 586, 755, 912
PspPI	GGNCC	2 cut(s)	49, 910
PsuI	RGATCY	3 cut(s)	218, 572, 728
RsaI	GTAC	3 cut(s)	35, 307, 845
RsaNI	GTAC	3 cut(s)	34, 306, 844
RseI	CAYNNNNRTG	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	405, 770, 828
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	5 cut(s)	218, 572, 640, 685, 728
Sau96I	GGNCC	2 cut(s)	49, 910
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	1 cut(s)	589
SfaNI	GCATC	3 cut(s)	178, 328, 401
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	115, 404
SmoI	CTYRAG	2 cut(s)	115, 404
Sse9I	AATT	1 cut(s)	771
SsiI	CCGC	3 cut(s)	5, 374, 869
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	4 cut(s)	214, 356, 436, 848
TaqI	TCGA	2 cut(s)	60, 336
TasI	AATT	1 cut(s)	771
Tru1I	TTAA	3 cut(s)	405, 770, 828
Tru9I	TTAA	3 cut(s)	405, 770, 828
TscAI	CASTG	3 cut(s)	219, 441, 785
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	5 cut(s)	210, 241, 275, 690, 737
TspGWI	ACGGA	2 cut(s)	41, 51
TspRI	CASTG	3 cut(s)	219, 441, 785
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.