AT5G11810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003623
Physical Location & Seq
Forward (+)
3808678 .. 3810748
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11810.1

Sequence Viewer

Length: 921 bp
ATGGCGGACAAATCAAGCAGATCACTGATATTGTACGGAGACGGCTTGGCTCGATTTGTCGATCCGTCAAATACCAACATCCATTCTCTTGCTTCCGTCGCTACTTGTGGCTTCTTGAGCCTTCCTAATGCACCTCCAGAAACTGAGAATGAAAGAATAGTTCGAGAATTCTCCCACTTGCTGGATGCATCCGAAGCTTATTCCATAGCTAGTGGACTAAAACCAAAGGGAAATGGAAATGATATCTCAACTTTGGCTGAAAGGTTTATGGGACTCAAAGCTGCTTTAGTTACGGACAGTTCTACTCTGACTTCTTTCGGAAAACTGATTGGCTTAGATGTATTACAGCTTAGTGAAATATGCCAAGAGAGTGATTCCTTTCCTTCTGATGCCACATCATCTAAACTACTAAAGCTGCTTGGATTTGAAGGAGGAAAGTGCTTGGATGTGAACCTATATGACTTGGTTTTTGTTCATTTCGGGGTTGATGAATATAATAACGGGAACAACATGGGAATTCTCGACTCTTTGATTGGCAGTATTATGGGAATGGCTCAACCAGGTTCAGAGATTCTATCGCGGTTGCATCTGTCTGTCGTTCTTAGCTATGGTTCTGTCACAGACAAAGATGTTTCAGTTTTTCCAATCAAGACTCCACAAGAAGACATTAACCCGGCATTTATAGGACTTGTCCCGCGTCAGAGCTACACCATGCGAGGTGAAAAGACACGGGATGATGTTCGGCACTACTGTCCTATGTTGGTAGCTCAGTGGCAGCATGGGGTGACCCGGAAAGACTTAGTTGATACCTTATCATTTGAAGCTCTCAAAAAGCTCTGTGGAAATCTTGTTATACCGGCTGATCGGTTCATCCACGAAGTTGCTTTCAAACTTTGGAAAGCCCCAAAATATGGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.39

Weight (kDa)

5.53

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 181, 911
AccII CGCG 2 cut(s) 580, 697
AciI CCGC 3 cut(s) 5, 580, 695
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 2 cut(s) 167, 516
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 181, 911
AgsI TTSAA 3 cut(s) 428, 821, 889
AjnI CCWGG 1 cut(s) 559
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 143
ApeKI GCWGC 3 cut(s) 281, 415, 775
ApoI RAATTY 2 cut(s) 167, 516
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AsuC2I CCSGG 2 cut(s) 674, 790
AsuHPI GGTGA 2 cut(s) 731, 796
BbsI GAAGAC 1 cut(s) 669
BbvI GCAGC 3 cut(s) 268, 402, 787
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 2 cut(s) 674, 790
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 210
BisI GCNGC 3 cut(s) 282, 416, 776
BlsI GCNGC 3 cut(s) 283, 417, 777
Bme1390I CCNGG 3 cut(s) 561, 674, 790
BmrFI CCNGG 3 cut(s) 561, 674, 790
BmsI GCATC 4 cut(s) 175, 197, 379, 595
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 2 cut(s) 674, 790
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 911
Bse118I RCCGGY 1 cut(s) 856
BseBI CCWGG 1 cut(s) 561
BseGI GGATG 6 cut(s) 78, 188, 190, 451, 739, 870
BseLI CCNNNNNNNGG 2 cut(s) 181, 911
BseMII CTCAG 2 cut(s) 135, 782
BseXI GCAGC 3 cut(s) 268, 402, 787
Bsh1236I CGCG 2 cut(s) 580, 697
BsiSI CCGG 3 cut(s) 674, 790, 857
BslFI GGGAC 2 cut(s) 285, 677
BslI CCNNNNNNNGG 2 cut(s) 181, 911
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 285, 677
Bsp143I GATC 3 cut(s) 20, 61, 862
BspACI CCGC 3 cut(s) 5, 580, 695
BspCNI CTCAG 2 cut(s) 136, 781
BspFNI CGCG 2 cut(s) 580, 697
BspPI GGATC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 856
BssAI RCCGGY 1 cut(s) 856
BssMI GATC 3 cut(s) 20, 61, 862
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 2 cut(s) 299, 752
BstDEI CTNAG 6 cut(s) 144, 334, 350, 602, 768, 799
BstEII GGTNACC 1 cut(s) 784
BstF5I GGATG 6 cut(s) 78, 188, 190, 451, 739, 870
BstFNI CGCG 2 cut(s) 580, 697
BstKTI GATC 3 cut(s) 23, 64, 865
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 3 cut(s) 20, 61, 862
BstMWI GCNNNNNNNGC 3 cut(s) 98, 117, 194
BstNI CCWGG 1 cut(s) 561
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 3 cut(s) 559, 672, 788
BstUI CGCG 2 cut(s) 580, 697
BstV1I GCAGC 3 cut(s) 268, 402, 787
BstV2I GAAGAC 1 cut(s) 669
BtsCI GGATG 6 cut(s) 78, 188, 190, 451, 739, 870
BtsIMutI CAGTG 2 cut(s) 23, 776
CaiI CAGNNNCTG 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 856
CseI GACGC 1 cut(s) 686
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 511, 712, 779
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 6 cut(s) 144, 334, 350, 602, 768, 799
DpnI GATC 3 cut(s) 22, 63, 864
DpnII GATC 3 cut(s) 20, 61, 862
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 784
EcoO65I GGTNACC 1 cut(s) 784
EcoRI GAATTC 2 cut(s) 167, 516
EcoRII CCWGG 1 cut(s) 559
EcoRV GATATC 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 3 cut(s) 514, 715, 782
FaqI GGGAC 2 cut(s) 285, 677
FatI CATG 3 cut(s) 510, 711, 778
FauI CCCGC 1 cut(s) 702
Fnu4HI GCNGC 3 cut(s) 282, 416, 776
FokI GGATG 6 cut(s) 65, 175, 197, 458, 746, 857
Fsp4HI GCNGC 3 cut(s) 282, 416, 776
FspBI CTAG 1 cut(s) 210
GluI GCNGC 3 cut(s) 282, 416, 776
GsuI CTGGAG 1 cut(s) 120
HapII CCGG 3 cut(s) 674, 790, 857
HgaI GACGC 1 cut(s) 686
Hin1II CATG 3 cut(s) 514, 715, 782
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 5 cut(s) 273, 374, 524, 571, 652
HpaII CCGG 3 cut(s) 674, 790, 857
HphI GGTGA 2 cut(s) 731, 796
Hpy166II GTNNAC 2 cut(s) 215, 451
Hpy188I TCNGA 6 cut(s) 193, 309, 320, 388, 568, 702
Hpy188III TCNNGA 5 cut(s) 115, 137, 164, 521, 649
Hpy8I GTNNAC 2 cut(s) 215, 451
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 131, 393, 422
HpyCH4III ACNGT 2 cut(s) 299, 752
HpyCH4V TGCA 3 cut(s) 131, 188, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 117, 194
HpyF3I CTNAG 6 cut(s) 144, 334, 350, 602, 768, 799
Hsp92II CATG 3 cut(s) 514, 715, 782
Kzo9I GATC 3 cut(s) 20, 61, 862
LmnI GCTCC 1 cut(s) 914
LpnPI CCDG 7 cut(s) 150, 167, 546, 573, 687, 803, 870
Lsp1109I GCAGC 3 cut(s) 268, 402, 787
LweI GCATC 4 cut(s) 175, 197, 379, 595
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 289, 616, 784
MalI GATC 3 cut(s) 22, 63, 864
MboI GATC 3 cut(s) 20, 61, 862
MboII GAAGA 1 cut(s) 674
MluCI AATT 2 cut(s) 167, 516
MlyI GAGTC 3 cut(s) 267, 518, 646
MnlI CCTC 3 cut(s) 144, 425, 710
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 2 cut(s) 669, 919
MspI CCGG 3 cut(s) 674, 790, 857
MspR9I CCNGG 3 cut(s) 561, 674, 790
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 2 cut(s) 580, 697
MwoI GCNNNNNNNGC 3 cut(s) 98, 117, 194
NciI CCSGG 2 cut(s) 674, 790
NdeII GATC 3 cut(s) 20, 61, 862
NlaIII CATG 3 cut(s) 514, 715, 782
NmuCI GTSAC 2 cut(s) 616, 784
NsiI ATGCAT 1 cut(s) 190
PfeI GAWTC 2 cut(s) 374, 571
PflMI CCANNNNNTGG 2 cut(s) 181, 911
PkrI GCNGC 3 cut(s) 283, 417, 777
PleI GAGTC 3 cut(s) 267, 518, 646
PpsI GAGTC 3 cut(s) 267, 518, 646
Psp6I CCWGG 1 cut(s) 559
PspEI GGTNACC 1 cut(s) 784
PspGI CCWGG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 669, 919
SatI GCNGC 3 cut(s) 282, 416, 776
Sau3AI GATC 3 cut(s) 20, 61, 862
SchI GAGTC 3 cut(s) 267, 518, 646
ScrFI CCNGG 3 cut(s) 561, 674, 790
SexAI ACCWGGT 1 cut(s) 559
SfaNI GCATC 4 cut(s) 175, 197, 379, 595
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 2 cut(s) 167, 516
SsiI CCGC 3 cut(s) 5, 580, 695
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 559, 672, 788
TaaI ACNGT 2 cut(s) 299, 752
TaqI TCGA 4 cut(s) 52, 60, 163, 522
TasI AATT 2 cut(s) 167, 516
TfiI GAWTC 2 cut(s) 374, 571
Tru1I TTAA 2 cut(s) 669, 919
Tru9I TTAA 2 cut(s) 669, 919
TscAI CASTG 2 cut(s) 30, 776
TseFI GTSAC 2 cut(s) 616, 784
TseI GCWGC 3 cut(s) 281, 415, 775
Tsp45I GTSAC 2 cut(s) 616, 784
TspDTI ATGAA 4 cut(s) 165, 464, 504, 859
TspGWI ACGGA 4 cut(s) 51, 54, 85, 308
TspRI CASTG 2 cut(s) 30, 776
Van91I CCANNNNNTGG 2 cut(s) 181, 911
XapI RAATTY 2 cut(s) 167, 516
XspI CTAG 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.