Rroxscaffold_7G00176730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003623
Physical Location & Seq
Forward (+)
16363241 .. 16366459
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176730.1

Sequence Viewer

Length: 867 bp
ATGGCAGACAAGCCAAGCCGAGCTCTGGTTCTGTACGGGGATGGGTTGGCGCGTTTCGTCAATCCATCACACACCCATCTCCATTCTCTGGCTTCCAAAGCTTCCTGTGGCTTCTTGAGCCTCCCCAATGCTCCTCCCTCAGAAAGCGAGGATGAAAGAATAGTTAGAGAGTTTGCAGTACTGGTGGATGCATATGAAGCCTACACTAATACAAGTGGAAGTACCACCAAAGAAGAAGGTGGGGAGAAAGCCACCATTTCCGAAAGATTCATGGGGATGAAAGCTGCTATAGTTACAAACAATTCAAATTTGAAGTCTTTTGGTACCAAACTTGGTTTCAGCGTGTTGCCAAATGATGGTTTTATCAAAAGCAGTGAGGCCCAAGCTGAGCTGCCAGTTGATACTGTGGCATCTGAATTGCTGAAGTTGCTTGGATTTCAAGAAGGAAAGACACTGGAGTCGAGCCGGTATGATTTAGTGATTGTGCATGTTGGGGCTGGTGAGGTGAATGTTGAGAATGACAAGGCTATTGCAGATGATGCGGAATATCCCAATGCTCTGATTGGTGCTATAATTAATATAGGCAAACCTGGAACTGAAATCAGTCTCCGTTTGCACTTGTCTGTTGTAATGAGCTATGGGGGTACCTCAGAGAAAGATGATCCCGACTTGTCGTTTTCAATCAGTAAAGATAACTCCAATCTTTCAAAGCTCGTTCCTCACCAAAGTTATACCATGAAAGGAGAGGTTCCACGGAAGGATGTCAGGCACCATTCCCCAATGTTACTGGCTCAGTGGCAATATGCCGTGACCCGGAAGGACATGGCAGAGACATTCTCTTTTAAAGATTTCAAGGAGCTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.42

Weight (kDa)

5.43

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 457
Acc65I GGTACC 2 cut(s) 323, 644
AccB1I GGYRCC 3 cut(s) 323, 644, 768
AccB7I CCANNNNNTGG 2 cut(s) 88, 356
AccII CGCG 1 cut(s) 52
AciI CCGC 1 cut(s) 542
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 5 cut(s) 35, 180, 223, 325, 646
AfiI CCNNNNNNNGG 4 cut(s) 25, 88, 356, 813
AgsI TTSAA 6 cut(s) 306, 313, 440, 681, 708, 853
AjnI CCWGG 1 cut(s) 589
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 8 cut(s) 23, 101, 284, 386, 391, 636, 712, 859
AluI AGCT 8 cut(s) 23, 101, 284, 386, 391, 636, 712, 859
Alw21I GWGCWC 2 cut(s) 25, 861
Alw26I GTCTC 2 cut(s) 611, 824
AlwI GGATC 1 cut(s) 656
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 284, 391
ApoI RAATTY 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AseI ATTAAT 1 cut(s) 576
Asp718I GGTACC 2 cut(s) 323, 644
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 814
AsuHPI GGTGA 3 cut(s) 512, 517, 713
BanI GGYRCC 3 cut(s) 323, 644, 768
BanII GRGCYC 2 cut(s) 25, 861
Bbv12I GWGCWC 2 cut(s) 25, 861
BbvI GCAGC 2 cut(s) 271, 378
BccI CCATC 4 cut(s) 35, 73, 84, 350
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 1 cut(s) 591
BcnI CCSGG 1 cut(s) 814
BcoDI GTCTC 2 cut(s) 611, 824
BfaI CTAG 1 cut(s) 865
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 2 cut(s) 285, 392
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 2 cut(s) 286, 393
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 591, 814
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 4 cut(s) 325, 646, 750, 770
BmrFI CCNGG 2 cut(s) 591, 814
BmsI GCATC 3 cut(s) 178, 419, 529
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpmI CTGGAG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 814
BsaJI CCNNGG 1 cut(s) 752
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 88, 356, 813
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 4 cut(s) 186, 395, 459, 792
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 5 cut(s) 46, 157, 193, 282, 766
BseLI CCNNNNNNNGG 4 cut(s) 25, 88, 356, 813
BseMII CTCAG 4 cut(s) 153, 378, 663, 806
BseNI ACTGG 4 cut(s) 186, 395, 459, 792
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 271, 378
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 3 cut(s) 323, 644, 768
BsiHKAI GWGCWC 2 cut(s) 25, 861
BsiSI CCGG 2 cut(s) 466, 814
BslI CCNNNNNNNGG 4 cut(s) 25, 88, 356, 813
BsmAI GTCTC 2 cut(s) 611, 824
BsnI GGCC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 25, 861
Bsp143I GATC 1 cut(s) 661
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 4 cut(s) 152, 379, 662, 805
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 4 cut(s) 325, 646, 750, 770
BspPI GGATC 1 cut(s) 656
BspT107I GGYRCC 3 cut(s) 323, 644, 768
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 4 cut(s) 186, 395, 459, 792
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 1 cut(s) 661
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 539
BstDEI CTNAG 4 cut(s) 139, 387, 649, 792
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 5 cut(s) 46, 157, 193, 282, 766
BstFNI CGCG 1 cut(s) 52
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 664
BstMAI GTCTC 2 cut(s) 611, 824
BstMBI GATC 1 cut(s) 661
BstMWI GCNNNNNNNGC 5 cut(s) 98, 117, 197, 427, 539
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 2 cut(s) 589, 812
BstSFI CTRYAG 1 cut(s) 288
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 271, 378
BsuRI GGCC 1 cut(s) 380
BtgI CCRYGG 1 cut(s) 752
BtsCI GGATG 5 cut(s) 46, 157, 193, 282, 766
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 3 cut(s) 379, 452, 800
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 379
Csp6I GTAC 5 cut(s) 34, 179, 222, 324, 645
CviAII CATG 4 cut(s) 271, 488, 736, 823
CviQI GTAC 5 cut(s) 34, 179, 222, 324, 645
DdeI CTNAG 4 cut(s) 139, 387, 649, 792
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
DraI TTTAAA 1 cut(s) 844
DrdI GACNNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 457
Ecl136II GAGCTC 2 cut(s) 23, 859
Eco24I GRGCYC 2 cut(s) 25, 861
Eco53kI GAGCTC 2 cut(s) 23, 859
Eco57I CTGAAG 1 cut(s) 443
EcoICRI GAGCTC 2 cut(s) 23, 859
EcoRII CCWGG 1 cut(s) 589
EcoT22I ATGCAT 1 cut(s) 193
EcoT38I GRGCYC 2 cut(s) 25, 861
FaeI CATG 4 cut(s) 274, 491, 739, 826
FalI AAGNNNNNCTT 1 cut(s) 845
FatI CATG 4 cut(s) 270, 487, 735, 822
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 285, 392
FokI GGATG 5 cut(s) 53, 164, 200, 289, 773
FriOI GRGCYC 2 cut(s) 25, 861
Fsp4HI GCNGC 2 cut(s) 285, 392
FspBI CTAG 1 cut(s) 865
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 285, 392
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 1 cut(s) 380
HapII CCGG 2 cut(s) 466, 814
HhaI GCGC 1 cut(s) 52
Hin1II CATG 4 cut(s) 274, 491, 739, 826
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 2 cut(s) 267, 458
HpaII CCGG 2 cut(s) 466, 814
HphI GGTGA 3 cut(s) 512, 517, 713
Hpy188I TCNGA 5 cut(s) 142, 262, 415, 561, 652
Hpy188III TCNNGA 3 cut(s) 115, 440, 665
HpyAV CCTTC 4 cut(s) 230, 437, 751, 811
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 5 cut(s) 176, 191, 487, 533, 616
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 117, 197, 427, 539
HpyF3I CTNAG 4 cut(s) 139, 387, 649, 792
Hsp92II CATG 4 cut(s) 274, 491, 739, 826
HspAI GCGC 1 cut(s) 50
KpnI GGTACC 2 cut(s) 327, 648
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 2 cut(s) 136, 856
Lsp1109I GCAGC 2 cut(s) 271, 378
LweI GCATC 3 cut(s) 178, 419, 529
MaeI CTAG 1 cut(s) 865
MaeIII GTNAC 3 cut(s) 292, 783, 808
MalI GATC 1 cut(s) 663
MboI GATC 1 cut(s) 661
MboII GAAGA 2 cut(s) 245, 853
MhlI GDGCHC 2 cut(s) 25, 861
MluCI AATT 4 cut(s) 301, 307, 416, 573
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 9 cut(s) 131, 142, 144, 148, 370, 496, 658, 729, 739
Mph1103I ATGCAT 1 cut(s) 193
MseI TTAA 2 cut(s) 576, 843
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 2 cut(s) 466, 814
MspR9I CCNGG 2 cut(s) 591, 814
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 5 cut(s) 98, 117, 197, 427, 539
NciI CCSGG 1 cut(s) 814
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 661
NlaIII CATG 4 cut(s) 274, 491, 739, 826
NlaIV GGNNCC 4 cut(s) 325, 646, 750, 770
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 808
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 491
PfeI GAWTC 1 cut(s) 267
PflMI CCANNNNNTGG 2 cut(s) 88, 356
PkrI GCNGC 2 cut(s) 286, 393
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 576
Psp124BI GAGCTC 2 cut(s) 25, 861
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 4 cut(s) 325, 646, 750, 770
PspPI GGNCC 1 cut(s) 379
RsaI GTAC 5 cut(s) 35, 180, 223, 325, 646
RsaNI GTAC 5 cut(s) 34, 179, 222, 324, 645
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 2 cut(s) 25, 861
SaqAI TTAA 2 cut(s) 576, 843
SatI GCNGC 2 cut(s) 285, 392
Sau3AI GATC 1 cut(s) 661
Sau96I GGNCC 1 cut(s) 379
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 591, 814
SduI GDGCHC 2 cut(s) 25, 861
SfaNI GCATC 3 cut(s) 178, 419, 529
SfcI CTRYAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 4 cut(s) 301, 307, 416, 573
SsiI CCGC 1 cut(s) 542
SspMI CTAG 1 cut(s) 865
SstI GAGCTC 2 cut(s) 25, 861
StyD4I CCNGG 2 cut(s) 589, 812
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 461
TasI AATT 4 cut(s) 301, 307, 416, 573
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 576, 843
Tru9I TTAA 2 cut(s) 576, 843
TscAI CASTG 3 cut(s) 379, 459, 800
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 2 cut(s) 284, 391
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 5 cut(s) 168, 210, 259, 293, 752
TspGWI ACGGA 2 cut(s) 599, 769
TspRI CASTG 3 cut(s) 379, 459, 800
Van91I CCANNNNNTGG 2 cut(s) 88, 356
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 1 cut(s) 307
XceI RCATGY 1 cut(s) 491
XspI CTAG 1 cut(s) 865
ZrmI AGTACT 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.