Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Forward (+)

4827359 .. 4829874

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1060900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGGACAAACCCAGCCGAGCTCTGGTTCTGTACGGAGATGGGTCGGCCCGGTTCGTCGACCCGTCACATACCCATCTCCACTCTCTAGCTTCCAAAGCTTCCTGTGGATTCTTGAGCCTCCCCATTGCCTCTCCCTCAGAAAGCGAGGGTGAGAGAATAGTTAGAGAGTTTGCAGTGCTGTTGGATGCGTATGAAGAAGAAAGAGGGAAGAAATCCGTGATTCCCATATCAGAAAGGTTCATGGGGATGAAAGCTGCTATATTTACAAACAATTCAAGTTTGAAATCTTTTGGTACCAAACTTGGTCTCAGTGTGTTCCAAATTGACGGTTTTCTTAAAAACAGTCCAGCCGGTGCTGAACAGCCAGTTGATTTCGGGGCATCTGAATTACTTCAGCTGCTTGGATTTCAAGAAGGGAAGGCAGCAGAGTCGAGTCAGTATGATTTGGTTTTTGTTCATGTTGGGGCTGGTGAGGTGGAATATCTCAATGCTTTGGTTGGTGGTATATCACAAATAGACCAGCCTGGATCTGAGGTCAGTTCCCGCTTGCACTTGTCTGTTGTGTTGAGCTATGGGAAGGTCTCAGAAAACGAAGATACCAACTTGTCAGTCTCGATTAGAAGAGATGATGAAAACTCTAATCTTTCGAAGCTCGTTCCTCGTCAAAGTTACACCGTGAAAGGAGAGAATCCTCGGGAGGATGTTAGGGACCATTGCCCGATGTTAATTGCTCAGCGGCAATATGCCGTGACCCGCAAGGACATGGCCGAGACATTCTCGTTTAAAGACTTCAAGGAGCGTGGTGGAAATCTTGTAATACCGGCAGATAGGTTTCTGCACGAAGTGGCCTTTAAGCTCTGGAAGGCCCCCAAGTACGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

32.39

Weight (kDa)

5.86

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	4 cut(s)	5, 547, 739, 757
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	768
AcuI	CTGAAG	1 cut(s)	380
AdeI	CACNNNGTG	1 cut(s)	847
AfaI	GTAC	3 cut(s)	35, 298, 878
AfiI	CCNNNNNNNGG	2 cut(s)	25, 878
AgsI	TTSAA	4 cut(s)	279, 286, 413, 796
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	8 cut(s)	23, 92, 101, 257, 400, 573, 655, 859
AluI	AGCT	8 cut(s)	23, 92, 101, 257, 400, 573, 655, 859
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	4 cut(s)	314, 589, 619, 767
AlwI	GGATC	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	4 cut(s)	48, 768, 849, 867
ApeKI	GCWGC	3 cut(s)	257, 400, 425
Asp700I	GAANNNNTTC	1 cut(s)	393
Asp718I	GGTACC	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	49, 712, 868
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	164, 485
AsuII	TTCGAA	1 cut(s)	650
AvaI	CYCGRG	1 cut(s)	696
AvaII	GGWCC	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	244, 387, 437
BccI	CCATC	2 cut(s)	35, 84
BceAI	ACGGC	1 cut(s)	734
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciT130I	CCWGG	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	4 cut(s)	314, 589, 619, 767
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	4 cut(s)	258, 401, 426, 740
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	4 cut(s)	259, 402, 427, 741
Bme1390I	CCNGG	2 cut(s)	52, 528
Bme18I	GGWCC	1 cut(s)	712
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	3 cut(s)	49, 712, 868
BmiI	GGNNCC	3 cut(s)	298, 713, 870
BmrFI	CCNGG	2 cut(s)	52, 528
BmsI	GCATC	2 cut(s)	178, 392
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
Bpu1102I	GCTNAGC	1 cut(s)	735
Bpu14I	TTCGAA	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	52
BsaI	GGTCTC	2 cut(s)	314, 589
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 878
Bse118I	RCCGGY	2 cut(s)	353, 823
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	2 cut(s)	126, 715
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	3 cut(s)	193, 255, 709
BseLI	CCNNNNNNNGG	2 cut(s)	25, 878
BseMI	GCAATG	2 cut(s)	126, 715
BseMII	CTCAG	5 cut(s)	153, 325, 525, 600, 749
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	244, 387, 437
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	824
BshFI	GGCC	4 cut(s)	50, 770, 851, 869
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	3 cut(s)	52, 354, 824
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	2 cut(s)	25, 878
BsmAI	GTCTC	4 cut(s)	314, 589, 619, 767
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	4 cut(s)	50, 770, 851, 869
Bso31I	GGTCTC	2 cut(s)	314, 589
BsoBI	CYCGRG	1 cut(s)	696
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	530
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	4 cut(s)	5, 547, 739, 757
BspANI	GGCC	4 cut(s)	50, 770, 851, 869
BspCNI	CTCAG	5 cut(s)	152, 324, 526, 599, 748
BspLI	GGNNCC	3 cut(s)	298, 713, 870
BspPI	GGATC	1 cut(s)	538
BspT104I	TTCGAA	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	2 cut(s)	314, 589
BsrDI	GCAATG	2 cut(s)	126, 715
BsrFI	RCCGGY	2 cut(s)	353, 823
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	2 cut(s)	353, 823
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	332, 347, 679
Bst6I	CTCTTC	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	5 cut(s)	139, 311, 534, 586, 735
BstF5I	GGATG	3 cut(s)	193, 255, 709
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	4 cut(s)	314, 589, 619, 767
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	50, 526
BstV1I	GCAGC	3 cut(s)	244, 387, 437
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	50, 770, 851, 869
BtsCI	GGATG	3 cut(s)	193, 255, 709
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 319
Cac8I	GCNNGC	1 cut(s)	551
Cfr10I	RCCGGY	2 cut(s)	353, 823
Cfr13I	GGNCC	3 cut(s)	49, 712, 868
Csp6I	GTAC	3 cut(s)	34, 297, 877
CspCI	CAANNNNNGTGG	2 cut(s)	784, 819
CviAII	CATG	4 cut(s)	244, 461, 766, 885
CviQI	GTAC	3 cut(s)	34, 297, 877
DdeI	CTNAG	5 cut(s)	139, 311, 534, 586, 735
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
DraI	TTTAAA	1 cut(s)	787
DraIII	CACNNNGTG	1 cut(s)	847
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco31I	GGTCTC	2 cut(s)	314, 589
Eco47I	GGWCC	1 cut(s)	712
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	868
EcoRII	CCWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	4 cut(s)	247, 464, 769, 888
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	4 cut(s)	243, 460, 765, 884
FauI	CCCGC	2 cut(s)	554, 764
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	258, 401, 426, 740
FokI	GGATG	3 cut(s)	200, 262, 716
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	258, 401, 426, 740
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	4 cut(s)	258, 401, 426, 740
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	4 cut(s)	50, 770, 851, 869
HapII	CCGG	3 cut(s)	52, 354, 824
Hin1II	CATG	4 cut(s)	247, 464, 769, 888
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	5 cut(s)	111, 223, 431, 436, 691
HpaII	CCGG	3 cut(s)	52, 354, 824
HphI	GGTGA	2 cut(s)	164, 485
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	142, 235, 388, 535, 589
Hpy188III	TCNNGA	5 cut(s)	115, 413, 616, 698, 862
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	4 cut(s)	410, 415, 574, 859
HpyCH4III	ACNGT	3 cut(s)	332, 347, 679
HpyCH4V	TGCA	3 cut(s)	176, 553, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	5 cut(s)	139, 311, 534, 586, 735
Hsp92II	CATG	4 cut(s)	247, 464, 769, 888
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	530
LmnI	GCTCC	2 cut(s)	799, 881
Lsp1109I	GCAGC	3 cut(s)	244, 387, 437
LweI	GCATC	2 cut(s)	178, 392
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	3 cut(s)	66, 671, 751
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MboII	GAAGA	5 cut(s)	209, 212, 223, 608, 636
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	4 cut(s)	274, 324, 389, 729
MlyI	GAGTC	2 cut(s)	440, 445
MmeI	TCCRAC	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	4 cut(s)	339, 728, 786, 855
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	2 cut(s)	400, 739
MspI	CCGG	3 cut(s)	52, 354, 824
MspR9I	CCNGG	2 cut(s)	52, 528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	4 cut(s)	247, 464, 769, 888
NlaIV	GGNNCC	3 cut(s)	298, 713, 870
NmeAIII	GCCGAG	2 cut(s)	44, 796
NmuCI	GTSAC	2 cut(s)	66, 751
NspV	TTCGAA	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	111, 223, 691
PkrI	GCNGC	4 cut(s)	259, 402, 427, 741
PleI	GAGTC	2 cut(s)	439, 444
PpsI	GAGTC	2 cut(s)	439, 444
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	298, 713, 870
PspPI	GGNCC	3 cut(s)	49, 712, 868
PsuI	RGATCY	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	35, 298, 878
RsaNI	GTAC	3 cut(s)	34, 297, 877
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	339, 728, 786, 855
SatI	GCNGC	4 cut(s)	258, 401, 426, 740
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	3 cut(s)	49, 712, 868
SchI	GAGTC	2 cut(s)	440, 445
ScrFI	CCNGG	2 cut(s)	52, 528
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	2 cut(s)	178, 392
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	4 cut(s)	274, 324, 389, 729
SsiI	CCGC	4 cut(s)	5, 547, 739, 757
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	50, 526
TaaI	ACNGT	3 cut(s)	332, 347, 679
TaqI	TCGA	4 cut(s)	60, 434, 617, 650
TasI	AATT	4 cut(s)	274, 324, 389, 729
TauI	GCSGC	1 cut(s)	742
TfiI	GAWTC	3 cut(s)	111, 223, 691
Tru1I	TTAA	4 cut(s)	339, 728, 786, 855
Tru9I	TTAA	4 cut(s)	339, 728, 786, 855
TscAI	CASTG	2 cut(s)	183, 319
TseFI	GTSAC	2 cut(s)	66, 751
TseI	GCWGC	3 cut(s)	257, 400, 425
Tsp45I	GTSAC	2 cut(s)	66, 751
TspDTI	ATGAA	5 cut(s)	210, 232, 266, 449, 648
TspGWI	ACGGA	2 cut(s)	51, 208
TspRI	CASTG	2 cut(s)	183, 319
VpaK11BI	GGWCC	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.