RLG00000012175

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003623
Physical Location & Seq
Forward (+)
15985685 .. 15988543
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012175

Sequence Viewer

Length: 945 bp
ATGGCAGACAAGCCAAGCCGAGCTCTGGTTCTGTACGGAGATGGGTTGGCGCGATTCGTCAATCCATCACACACCCATCTCCATTCTCTGGCTTCCAAAGCTTCCTGTGGCTTCTTGAGCCTCCCCAATGCTCCTCCCTCAGAAAGCGAGGATGAGAGAATAGTTAGAGAGTTTGCAGTACTGGTGGATGCATATGAAGCCTACACTAATACAAGTGGAAGTACCACCAAAGAAGAAGGTGGGGAGAAAGCCACCATTTCCGAAAGATTCATGGGGATGAAAGCTGCTATAGTTACAAACAATTCAAATTTGAAGTCTTTTGGTACCAAACTTCATTTCAGCGTGTTGCCAAATGATGGTTTTATCAAAAGCAGTGAGGCCCAAGCTGAGCTGCCAGTTGATACTGTGGCATCTGAATTGCTGAAGTTGCTTGGATTTCAAGAAGGAAAGACTCTGGAGTCGAGCCGGTATGATTTAGTGTTTGTGCATGTTGGGGCTGGTGAGGTGAATGTTAAGAATGACAAGGCTATTGCAGATGATGTGGAATATCCCAATGCTTTGATTGGTGCTATAATTAATATAGGCAAACCTGGAACTGAAATCAGTCTCCGTTTGCACTTGTCTGTTGTAATGAGCTATGGGGGTACCTCAGAGAAAGATGATCCCGACTTGTCGTTTTCAATCAGTAAAGATAACTCCAATCTTTCAAAGCTCGTTCCTCACCAAAGTTATACCATGAAAGGAGAGGTTCCGCGGAAGGATGTCAGGCACCATTCCCCAATGTTACTGGCTCAGTGGCAATATGCTGTGACCCGGAAGGACATGGCAGAGACATTCTCTTTTAAAGATTTCAAGGAGCATGGTGGAAATCTTGTAATTCCGGCAGATAGATTTCTGCACGAAGTAGCCTACAAACTTTGGAAGGCCCCCAAATATGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

34.44

Weight (kDa)

6.13

Isoelectric Point (pI)

24.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 457
Acc65I GGTACC 2 cut(s) 323, 644
AccB1I GGYRCC 3 cut(s) 323, 644, 768
AccB7I CCANNNNNTGG 2 cut(s) 88, 356
AccII CGCG 2 cut(s) 52, 754
AciI CCGC 2 cut(s) 752, 754
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 5 cut(s) 35, 180, 223, 325, 646
AfiI CCNNNNNNNGG 4 cut(s) 25, 88, 356, 935
AgsI TTSAA 6 cut(s) 306, 313, 440, 681, 708, 853
AjnI CCWGG 1 cut(s) 589
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 7 cut(s) 23, 101, 284, 386, 391, 636, 712
AluI AGCT 7 cut(s) 23, 101, 284, 386, 391, 636, 712
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 611, 824
AlwI GGATC 1 cut(s) 656
AoxI GGCC 2 cut(s) 378, 924
ApeKI GCWGC 2 cut(s) 284, 391
ApoI RAATTY 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AseI ATTAAT 1 cut(s) 576
Asp718I GGTACC 2 cut(s) 323, 644
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 379, 925
AsuC2I CCSGG 1 cut(s) 814
AsuHPI GGTGA 3 cut(s) 512, 517, 713
BanI GGYRCC 3 cut(s) 323, 644, 768
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 271, 378
BccI CCATC 4 cut(s) 35, 73, 84, 350
BciT130I CCWGG 1 cut(s) 591
BcnI CCSGG 1 cut(s) 814
BcoDI GTCTC 2 cut(s) 611, 824
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 2 cut(s) 285, 392
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 2 cut(s) 286, 393
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 591, 814
BmgT120I GGNCC 2 cut(s) 379, 925
BmiI GGNNCC 5 cut(s) 325, 646, 750, 770, 927
BmrFI CCNGG 2 cut(s) 591, 814
BmsI GCATC 2 cut(s) 178, 419
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpmI CTGGAG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 814
BsaJI CCNNGG 1 cut(s) 752
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 88, 356, 935
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 186, 395, 792
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 4 cut(s) 157, 193, 282, 766
BseLI CCNNNNNNNGG 4 cut(s) 25, 88, 356, 935
BseMII CTCAG 4 cut(s) 153, 378, 663, 806
BseNI ACTGG 3 cut(s) 186, 395, 792
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 271, 378
BsgI GTGCAG 1 cut(s) 881
Bsh1236I CGCG 2 cut(s) 52, 754
BshFI GGCC 2 cut(s) 380, 926
BshNI GGYRCC 3 cut(s) 323, 644, 768
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 3 cut(s) 466, 814, 881
BslI CCNNNNNNNGG 4 cut(s) 25, 88, 356, 935
BsmAI GTCTC 2 cut(s) 611, 824
BsnI GGCC 2 cut(s) 380, 926
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 661
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 2 cut(s) 752, 754
BspANI GGCC 2 cut(s) 380, 926
BspCNI CTCAG 4 cut(s) 152, 379, 662, 805
BspFNI CGCG 2 cut(s) 52, 754
BspLI GGNNCC 5 cut(s) 325, 646, 750, 770, 927
BspPI GGATC 1 cut(s) 656
BspT107I GGYRCC 3 cut(s) 323, 644, 768
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 3 cut(s) 186, 395, 792
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 1 cut(s) 661
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 1 cut(s) 406
BstDEI CTNAG 4 cut(s) 139, 387, 649, 792
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 4 cut(s) 157, 193, 282, 766
BstFNI CGCG 2 cut(s) 52, 754
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 664
BstMAI GTCTC 2 cut(s) 611, 824
BstMBI GATC 1 cut(s) 661
BstMWI GCNNNNNNNGC 4 cut(s) 98, 117, 197, 427
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 2 cut(s) 589, 812
BstSFI CTRYAG 1 cut(s) 288
BstUI CGCG 2 cut(s) 52, 754
BstV1I GCAGC 2 cut(s) 271, 378
BsuRI GGCC 2 cut(s) 380, 926
BtgI CCRYGG 1 cut(s) 752
BtsCI GGATG 4 cut(s) 157, 193, 282, 766
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 379, 800
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 379, 925
Cfr42I CCGCGG 1 cut(s) 755
Csp6I GTAC 5 cut(s) 34, 179, 222, 324, 645
CviAII CATG 6 cut(s) 271, 488, 736, 823, 860, 942
CviQI GTAC 5 cut(s) 34, 179, 222, 324, 645
DdeI CTNAG 4 cut(s) 139, 387, 649, 792
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
DraI TTTAAA 1 cut(s) 844
DrdI GACNNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 457
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 589
EcoT22I ATGCAT 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 6 cut(s) 274, 491, 739, 826, 863, 945
FatI CATG 6 cut(s) 270, 487, 735, 822, 859, 941
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 285, 392
FokI GGATG 4 cut(s) 164, 200, 289, 773
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 285, 392
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 285, 392
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 2 cut(s) 380, 926
HapII CCGG 3 cut(s) 466, 814, 881
HhaI GCGC 1 cut(s) 52
Hin1II CATG 6 cut(s) 274, 491, 739, 826, 863, 945
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 4 cut(s) 54, 267, 451, 458
HpaII CCGG 3 cut(s) 466, 814, 881
HphI GGTGA 3 cut(s) 512, 517, 713
Hpy188I TCNGA 4 cut(s) 142, 262, 415, 652
Hpy188III TCNNGA 4 cut(s) 115, 440, 455, 665
HpyAV CCTTC 5 cut(s) 230, 437, 751, 811, 916
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 6 cut(s) 176, 191, 487, 533, 616, 898
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 117, 197, 427
HpyF3I CTNAG 4 cut(s) 139, 387, 649, 792
Hsp92II CATG 6 cut(s) 274, 491, 739, 826, 863, 945
HspAI GCGC 1 cut(s) 50
KpnI GGTACC 2 cut(s) 327, 648
KspI CCGCGG 1 cut(s) 755
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 3 cut(s) 136, 856, 938
Lsp1109I GCAGC 2 cut(s) 271, 378
LweI GCATC 2 cut(s) 178, 419
MaeIII GTNAC 3 cut(s) 292, 783, 808
MalI GATC 1 cut(s) 663
MboI GATC 1 cut(s) 661
MboII GAAGA 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 5 cut(s) 301, 307, 416, 573, 876
MlyI GAGTC 2 cut(s) 445, 467
MnlI CCTC 9 cut(s) 131, 142, 144, 148, 370, 496, 658, 729, 739
Mph1103I ATGCAT 1 cut(s) 193
MseI TTAA 3 cut(s) 513, 576, 843
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 3 cut(s) 466, 814, 881
MspR9I CCNGG 2 cut(s) 591, 814
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 2 cut(s) 52, 754
MwoI GCNNNNNNNGC 4 cut(s) 98, 117, 197, 427
NciI CCSGG 1 cut(s) 814
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 661
NlaIII CATG 6 cut(s) 274, 491, 739, 826, 863, 945
NlaIV GGNNCC 5 cut(s) 325, 646, 750, 770, 927
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 808
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 491
PfeI GAWTC 2 cut(s) 54, 267
PflMI CCANNNNNTGG 2 cut(s) 88, 356
PkrI GCNGC 2 cut(s) 286, 393
PleI GAGTC 2 cut(s) 445, 466
PpsI GAGTC 2 cut(s) 445, 466
PshBI ATTAAT 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 5 cut(s) 325, 646, 750, 770, 927
PspPI GGNCC 2 cut(s) 379, 925
RsaI GTAC 5 cut(s) 35, 180, 223, 325, 646
RsaNI GTAC 5 cut(s) 34, 179, 222, 324, 645
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 25
SacII CCGCGG 1 cut(s) 755
SaqAI TTAA 3 cut(s) 513, 576, 843
SatI GCNGC 2 cut(s) 285, 392
Sau3AI GATC 1 cut(s) 661
Sau96I GGNCC 2 cut(s) 379, 925
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 2 cut(s) 445, 467
ScrFI CCNGG 2 cut(s) 591, 814
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 2 cut(s) 178, 419
SfcI CTRYAG 1 cut(s) 288
Sfr303I CCGCGG 1 cut(s) 755
SgrBI CCGCGG 1 cut(s) 755
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 5 cut(s) 301, 307, 416, 573, 876
SsiI CCGC 2 cut(s) 752, 754
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 589, 812
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 461
TasI AATT 5 cut(s) 301, 307, 416, 573, 876
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 54, 267
Tru1I TTAA 3 cut(s) 513, 576, 843
Tru9I TTAA 3 cut(s) 513, 576, 843
TscAI CASTG 2 cut(s) 379, 800
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 2 cut(s) 284, 391
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 5 cut(s) 210, 259, 293, 323, 752
TspGWI ACGGA 2 cut(s) 51, 599
TspRI CASTG 2 cut(s) 379, 800
Van91I CCANNNNNTGG 2 cut(s) 88, 356
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 1 cut(s) 307
XceI RCATGY 1 cut(s) 491
ZrmI AGTACT 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.