Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Reverse (-)

56566668 .. 56570046

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG333000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAGACAAGCCAAGCCGAGCTCTGGTTCTGTACGGAGATGGGTTGGCGCGTTTCGTCAATCCATCACACACCCATCTCCATTCTCTGGCTTCCAAAGCTTCCTGTGGCTTCTTGAGCCTCCCCAATGCTCCTCCCTCAGAAAGCGAGGATGAGAGAATAGTTAGAGAGTTTGCAGTACTGGTGGATGCATATGAAGCCTACACTAATACAAGTGGAAGTACCACCAAAGAAGAAGGTGGGGAGAAAGCCACCATTTCCGAAAGATTCATGGGGATGAAAGCTGCTATAGTTACAAACAATTCAAATTTGAAGTCTTTTGGTACCAAACTTGGTTTCAGCGTGTTGCCAAATGATGGTTTTATCAAAAGCAGCGAGGCCCAAGCTGACCTGCCAGTTGATACTGTGGCATCTGAATTGCTGAAGTTGCTTGGATTTCAAGAAGGAAAGACACTGGAGTCGAGCCGGTATGATTTAGTGTTTGTGCATGTTGGGGCTGGTGAGGTGAATGTTAAGAATGACAAGGCTATTGCAGATGATGTGGAATATCCCAATGCTTTGATTGGTGCTATAGTTAATATAGGCAAACCTGGAACTGAAATCAGTCTCCGTTTGCACTTGTCTGTTGTAATGAGCTATGGGGGTACCTCAGAGAAAGATGATCCCGACTTGTCATTTTCAATCAGTAAAGATAACTCCAATCTTTCAAAGCTCGTTCCTCACCAAAGTTATACCATGAAAGGAGAGGTTCCGCAGAAGGATGTCAGGCACCATTCCCCAATGTTGCTGGCTCAGTGGCAATATGCTGTGACCAGGAAGGACATGGCAGAGACATTCTCTTTTAAAGATTTCAAGGAGGTACAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.54

Weight (kDa)

5.53

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	399
Acc65I	GGTACC	2 cut(s)	323, 644
AccB1I	GGYRCC	3 cut(s)	323, 644, 768
AccB7I	CCANNNNNTGG	2 cut(s)	88, 356
AccII	CGCG	1 cut(s)	52
AciI	CCGC	1 cut(s)	752
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	6 cut(s)	35, 180, 223, 325, 646, 861
AfiI	CCNNNNNNNGG	3 cut(s)	25, 88, 356
AgsI	TTSAA	6 cut(s)	306, 313, 440, 681, 708, 853
AjnI	CCWGG	2 cut(s)	589, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	6 cut(s)	23, 101, 284, 386, 636, 712
AluI	AGCT	6 cut(s)	23, 101, 284, 386, 636, 712
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	2 cut(s)	611, 824
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	284, 372
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
Asp718I	GGTACC	2 cut(s)	323, 644
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	3 cut(s)	512, 517, 713
BanI	GGYRCC	3 cut(s)	323, 644, 768
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	271, 384
BccI	CCATC	4 cut(s)	35, 73, 84, 350
BciT130I	CCWGG	2 cut(s)	591, 814
BcoDI	GTCTC	2 cut(s)	611, 824
BfmI	CTRYAG	2 cut(s)	288, 570
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	2 cut(s)	285, 373
BlsI	GCNGC	2 cut(s)	286, 374
BmcAI	AGTACT	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	591, 814
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	4 cut(s)	325, 646, 750, 770
BmrFI	CCNGG	2 cut(s)	591, 814
BmsI	GCATC	2 cut(s)	178, 419
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 88, 356
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	3 cut(s)	186, 395, 459
BseBI	CCWGG	2 cut(s)	591, 814
BseGI	GGATG	4 cut(s)	157, 193, 282, 766
BseLI	CCNNNNNNNGG	3 cut(s)	25, 88, 356
BseMII	CTCAG	3 cut(s)	153, 663, 806
BseNI	ACTGG	3 cut(s)	186, 395, 459
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	271, 384
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	3 cut(s)	323, 644, 768
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	25, 88, 356
BsmAI	GTCTC	2 cut(s)	611, 824
BsnI	GGCC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	661
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	3 cut(s)	152, 662, 805
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	325, 646, 750, 770
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	3 cut(s)	323, 644, 768
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	186, 395, 459
BssAI	RCCGGY	1 cut(s)	465
BssMI	GATC	1 cut(s)	661
Bst2UI	CCWGG	2 cut(s)	591, 814
Bst4CI	ACNGT	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	789
BstDEI	CTNAG	3 cut(s)	139, 649, 792
BstF5I	GGATG	4 cut(s)	157, 193, 282, 766
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	2 cut(s)	611, 824
BstMBI	GATC	1 cut(s)	661
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
BstNI	CCWGG	2 cut(s)	591, 814
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	589, 812
BstSFI	CTRYAG	2 cut(s)	288, 570
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	271, 384
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	157, 193, 282, 766
BtsIMutI	CAGTG	2 cut(s)	452, 800
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	789
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	6 cut(s)	34, 179, 222, 324, 645, 860
CviAII	CATG	4 cut(s)	271, 488, 736, 823
CviQI	GTAC	6 cut(s)	34, 179, 222, 324, 645, 860
DdeI	CTNAG	3 cut(s)	139, 649, 792
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
DraI	TTTAAA	1 cut(s)	844
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	589, 812
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	4 cut(s)	274, 491, 739, 826
FatI	CATG	4 cut(s)	270, 487, 735, 822
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	285, 373
FokI	GGATG	4 cut(s)	164, 200, 289, 773
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	285, 373
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	2 cut(s)	285, 373
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	466
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	274, 491, 739, 826
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	267, 458
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	3 cut(s)	512, 517, 713
Hpy188I	TCNGA	4 cut(s)	142, 262, 415, 652
Hpy188III	TCNNGA	3 cut(s)	115, 440, 665
HpyAV	CCTTC	4 cut(s)	230, 437, 751, 811
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	176, 191, 487, 533, 616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
HpyF3I	CTNAG	3 cut(s)	139, 649, 792
Hsp92II	CATG	4 cut(s)	274, 491, 739, 826
HspAI	GCGC	1 cut(s)	50
KpnI	GGTACC	2 cut(s)	327, 648
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	2 cut(s)	271, 384
LweI	GCATC	2 cut(s)	178, 419
MaeIII	GTNAC	2 cut(s)	292, 808
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	4 cut(s)	301, 307, 416, 863
MlyI	GAGTC	1 cut(s)	467
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	3 cut(s)	513, 576, 843
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	2 cut(s)	591, 814
MvaI	CCWGG	2 cut(s)	591, 814
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	661
NlaIII	CATG	4 cut(s)	274, 491, 739, 826
NlaIV	GGNNCC	4 cut(s)	325, 646, 750, 770
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	267
PflMI	CCANNNNNTGG	2 cut(s)	88, 356
PkrI	GCNGC	2 cut(s)	286, 374
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	589, 812
PspGI	CCWGG	2 cut(s)	589, 812
PspN4I	GGNNCC	4 cut(s)	325, 646, 750, 770
PspPI	GGNCC	1 cut(s)	379
RsaI	GTAC	6 cut(s)	35, 180, 223, 325, 646, 861
RsaNI	GTAC	6 cut(s)	34, 179, 222, 324, 645, 860
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	513, 576, 843
SatI	GCNGC	2 cut(s)	285, 373
Sau3AI	GATC	1 cut(s)	661
Sau96I	GGNCC	1 cut(s)	379
ScaI	AGTACT	1 cut(s)	180
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	591, 814
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	2 cut(s)	178, 419
SfcI	CTRYAG	2 cut(s)	288, 570
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	4 cut(s)	301, 307, 416, 863
SsiI	CCGC	1 cut(s)	752
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	589, 812
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	461
TasI	AATT	4 cut(s)	301, 307, 416, 863
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	3 cut(s)	513, 576, 843
Tru9I	TTAA	3 cut(s)	513, 576, 843
TscAI	CASTG	2 cut(s)	459, 800
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	2 cut(s)	284, 372
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	4 cut(s)	210, 259, 293, 752
TspGWI	ACGGA	2 cut(s)	51, 599
TspRI	CASTG	2 cut(s)	459, 800
Van91I	CCANNNNNTGG	2 cut(s)	88, 356
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	820
ZrmI	AGTACT	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.