Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Reverse (-)

4061855 .. 4064007

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1060500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCGGACAAACCCAGCCGAGCTTTGGTTCTGTACGGAGATGGGTCGGCCCGGTTCGTCGACCCGTCACACACCCATCTCCACTCTCTCGCTTCCAAAGCTTCCTGTGGATTCCTGAGCCTCCCCATTACTCCTCCCTCAGAAAGCGAGGATGAGAGAGTAGTTAGAGAGTTTGCAGTACTGCTGGATGCGTATGAAGCTTACCTTGATACGAGTTCAGGAATCACTAAAGAAGAAAGAGAGAAGAAATCCTTGATTCCCATATCCGAAAGGTTCATGGGGATGAAAGCTGCTATATTTACAAACAATTCAAGTTTGAAATCTTTTGGTACCAAACTTGGTTTCAGCATATTCCAAATTGACGGTTTTCTTAAAAACAGTCCAGCAGGCGCTGAACAACCAATTAATTTCGGGGCATCTAAGTTACTTAAGCTGCTTGGATTTCAAGAAGGGAAGGCAGTGGAGTCGAGCCAGTATGATTTGGTCTTTGTTCATGTTGCGGCTGCTGAGGTGGAATATCTCAATGCTTTGGTTGGTGCTATATCGCAAATAGACCAGCCGGGATCTGAGGTCAGTTCCCGCTTGCACTTGTCTGTTGTGTTGAACTATGGGAAGGTCTCAGAAAACGATGTTACCAACTTGTCCGTCTCAATCAGAAAAGATGATGAAAACTCTGATCTTGCGAAGCTCATTCCTCGTCAAAGTTACACCATGAAAGGAGAGAATCCTCGGAAGGATGTTAGGGACCATTGCCCAATGTTAATTGCTCAGTGGCAATATGCCGTAACCCGCAAGGATATGGCAGAGACATTTTCCTTTAAGGATTTCAAAGAGAATGGTGGAAATCTTGTAATACCGGCAGATAGGTTTCTGCACGAAGTGGCCTTTAAGCTTTGGAAGGCCCCCAAGTATGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

33.82

Weight (kDa)

6.2

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	4 cut(s)	5, 500, 580, 790
AclWI	GGATC	1 cut(s)	571
AdeI	CACNNNGTG	1 cut(s)	880
AfaI	GTAC	3 cut(s)	35, 180, 331
AfiI	CCNNNNNNNGG	2 cut(s)	25, 911
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	312, 319, 446, 604, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	7 cut(s)	23, 101, 200, 290, 433, 688, 892
AluI	AGCT	7 cut(s)	23, 101, 200, 290, 433, 688, 892
Alw26I	GTCTC	3 cut(s)	622, 652, 800
AlwI	GGATC	1 cut(s)	571
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	3 cut(s)	48, 882, 900
ApeKI	GCWGC	3 cut(s)	290, 433, 503
AseI	ATTAAT	1 cut(s)	405
Asp718I	GGTACC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	49, 745, 901
AsuC2I	CCSGG	2 cut(s)	52, 561
AvaII	GGWCC	1 cut(s)	745
BanI	GGYRCC	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	277, 420, 490
BccI	CCATC	2 cut(s)	35, 84
BceAI	ACGGC	1 cut(s)	767
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BcnI	CCSGG	2 cut(s)	52, 561
BcoDI	GTCTC	3 cut(s)	622, 652, 800
BfoI	RGCGCY	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	4 cut(s)	291, 434, 501, 504
BlsI	GCNGC	4 cut(s)	292, 435, 502, 505
BmcAI	AGTACT	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	52, 561
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	3 cut(s)	49, 745, 901
BmiI	GGNNCC	3 cut(s)	331, 746, 903
BmrFI	CCNGG	2 cut(s)	52, 561
BmsI	GCATC	2 cut(s)	178, 425
Bpu10I	CCTNAGC	2 cut(s)	116, 507
BpuMI	CCSGG	2 cut(s)	52, 561
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 911
Bse118I	RCCGGY	1 cut(s)	856
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	748
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	4 cut(s)	157, 193, 288, 742
BseLI	CCNNNNNNNGG	2 cut(s)	25, 911
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	6 cut(s)	107, 153, 498, 558, 633, 782
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	277, 420, 490
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	857
BshFI	GGCC	3 cut(s)	50, 884, 902
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	3 cut(s)	52, 560, 857
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	25, 911
BsmAI	GTCTC	3 cut(s)	622, 652, 800
BsmBI	CGTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	758
BsnI	GGCC	3 cut(s)	50, 884, 902
Bso31I	GGTCTC	1 cut(s)	622
Bsp143I	GATC	2 cut(s)	563, 676
BspACI	CCGC	4 cut(s)	5, 500, 580, 790
BspANI	GGCC	3 cut(s)	50, 884, 902
BspCNI	CTCAG	6 cut(s)	108, 152, 499, 559, 632, 781
BspLI	GGNNCC	3 cut(s)	331, 746, 903
BspPI	GGATC	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	748
BsrFI	RCCGGY	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	856
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	2 cut(s)	563, 676
Bst4CI	ACNGT	2 cut(s)	365, 380
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	388, 584
BstDEI	CTNAG	7 cut(s)	116, 139, 420, 507, 567, 619, 768
BstF5I	GGATG	4 cut(s)	157, 193, 288, 742
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	2 cut(s)	566, 679
BstMAI	GTCTC	3 cut(s)	622, 652, 800
BstMBI	GATC	2 cut(s)	563, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 197
BstSCI	CCNGG	2 cut(s)	50, 559
BstV1I	GCAGC	3 cut(s)	277, 420, 490
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	3 cut(s)	50, 884, 902
BtsCI	GGATG	4 cut(s)	157, 193, 288, 742
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	465, 776
Cac8I	GCNNGC	2 cut(s)	388, 584
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	856
Cfr13I	GGNCC	3 cut(s)	49, 745, 901
Csp6I	GTAC	3 cut(s)	34, 179, 330
CviAII	CATG	4 cut(s)	277, 494, 712, 918
CviQI	GTAC	3 cut(s)	34, 179, 330
DdeI	CTNAG	7 cut(s)	116, 139, 420, 507, 567, 619, 768
DpnI	GATC	2 cut(s)	565, 678
DpnII	GATC	2 cut(s)	563, 676
DraIII	CACNNNGTG	1 cut(s)	880
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	745
EcoO109I	RGGNCCY	1 cut(s)	901
Esp3I	CGTCTC	1 cut(s)	652
FaeI	CATG	4 cut(s)	280, 497, 715, 921
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 236, 268
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	4 cut(s)	276, 493, 711, 917
FauI	CCCGC	2 cut(s)	587, 797
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	291, 434, 501, 504
FokI	GGATG	4 cut(s)	164, 200, 295, 749
Fsp4HI	GCNGC	4 cut(s)	291, 434, 501, 504
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	4 cut(s)	291, 434, 501, 504
GsaI	CCCAGC	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	50, 884, 902
HapII	CCGG	3 cut(s)	52, 560, 857
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	4 cut(s)	280, 497, 715, 921
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	3 cut(s)	99, 198, 890
HinfI	GANTC	5 cut(s)	111, 222, 256, 464, 724
HpaII	CCGG	3 cut(s)	52, 560, 857
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	7 cut(s)	142, 268, 568, 622, 656, 676, 732
Hpy188III	TCNNGA	3 cut(s)	115, 219, 446
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	5 cut(s)	443, 448, 607, 727, 892
HpyCH4III	ACNGT	2 cut(s)	365, 380
HpyCH4V	TGCA	3 cut(s)	176, 586, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 197
HpyF3I	CTNAG	7 cut(s)	116, 139, 420, 507, 567, 619, 768
Hsp92II	CATG	4 cut(s)	280, 497, 715, 921
HspAI	GCGC	1 cut(s)	390
KpnI	GGTACC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	563, 676
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	3 cut(s)	277, 420, 490
LweI	GCATC	2 cut(s)	178, 425
MaeIII	GTNAC	5 cut(s)	66, 423, 631, 704, 784
MalI	GATC	2 cut(s)	565, 678
MboI	GATC	2 cut(s)	563, 676
MboII	GAAGA	2 cut(s)	245, 256
MflI	RGATCY	1 cut(s)	563
MluCI	AATT	5 cut(s)	307, 357, 402, 406, 762
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	8 cut(s)	131, 142, 144, 148, 502, 562, 705, 738
MseI	TTAA	6 cut(s)	372, 405, 429, 761, 819, 888
MslI	CAYNNNNRTG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	3 cut(s)	52, 560, 857
MspR9I	CCNGG	2 cut(s)	52, 561
MwoI	GCNNNNNNNGC	2 cut(s)	98, 197
NciI	CCSGG	2 cut(s)	52, 561
NdeII	GATC	2 cut(s)	563, 676
NlaIII	CATG	4 cut(s)	280, 497, 715, 921
NlaIV	GGNNCC	3 cut(s)	331, 746, 903
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	66
PfeI	GAWTC	4 cut(s)	111, 222, 256, 724
PkrI	GCNGC	4 cut(s)	292, 435, 502, 505
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PshBI	ATTAAT	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	3 cut(s)	331, 746, 903
PspPI	GGNCC	3 cut(s)	49, 745, 901
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	3 cut(s)	35, 180, 331
RsaNI	GTAC	3 cut(s)	34, 179, 330
RseI	CAYNNNNRTG	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	6 cut(s)	372, 405, 429, 761, 819, 888
SatI	GCNGC	4 cut(s)	291, 434, 501, 504
Sau3AI	GATC	2 cut(s)	563, 676
Sau96I	GGNCC	3 cut(s)	49, 745, 901
ScaI	AGTACT	1 cut(s)	180
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	2 cut(s)	52, 561
SfaNI	GCATC	2 cut(s)	178, 425
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	5 cut(s)	307, 357, 402, 406, 762
SsiI	CCGC	4 cut(s)	5, 500, 580, 790
StyD4I	CCNGG	2 cut(s)	50, 559
TaaI	ACNGT	2 cut(s)	365, 380
TaqI	TCGA	2 cut(s)	60, 467
TasI	AATT	5 cut(s)	307, 357, 402, 406, 762
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	4 cut(s)	111, 222, 256, 724
Tru1I	TTAA	6 cut(s)	372, 405, 429, 761, 819, 888
Tru9I	TTAA	6 cut(s)	372, 405, 429, 761, 819, 888
TscAI	CASTG	2 cut(s)	465, 776
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	3 cut(s)	290, 433, 503
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	6 cut(s)	210, 265, 299, 482, 681, 728
TspGWI	ACGGA	2 cut(s)	51, 634
TspRI	CASTG	2 cut(s)	465, 776
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	745
VspI	ATTAAT	1 cut(s)	405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.