Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Reverse (-)

24351750 .. 24355014

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31970.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGGACAAGCCAAGCCGAGCTCTGGTTTTATACGGAGATGGGTTGGCCCGTTTCGTCAATCCATCACACACCCATCTCCATTCTCTCGCTTCCAATGCTTCCTGTGGCTTCTTGAGCCTCCCCAATGCTCCTCCCTCAGAAAGCGAGGATGAGAGGATTGCTAGAGAGTTTGCAGTGCTTGTGGATGCATATGAAGCTTATACCAATCCAAGTGGAAGTACCACCAAAGAAGAAGGTGGGGAGAATTTCACCATATCCGAAAGGTTCATGGGGATGAAAGCTGCTATAGTTACAAACAATCCAAGTTTGAAGTCTTTTGGTACCAGACTTGGTTTCTCCGTGCTGCCGAATGATGGTTTTATCAAAAGCAGTAAGTCCCAAGCCGAGCTGCCAGTTGAGTCCGTGGCAGCTGAATTGCTGAAGTTGCTTGGATTTGGACAGACAGTGGAGCCGAGACAGTATGATTTAGTGTTCGTGCATGTTGGGGCAGGTGAGGTAGATGTTAAGAATGATCAGGCAATTGCTGATGATGTGGAATATCCCAATGCTTTGGTTGGTGCTATAATGAACATAGGCAAACCTGGAACTGAAATCAGTCTCCATTTGCACTTGTCTGTTGTAATGAGCTATGGGGGTACCTCAGAAAAAGATGATGTCAACTTGTCATTCTCAATCAGTAAAGATGGTACCAACTCCAATCTGTCAAAGCTCGTTCCTCATCAAAGTTATACTATGAGAGGAGAGGCTCTGCGGAAGGATGTTAGGCACCATTCCCCAATGCTATTGGCTCAATGGCAATATGCTGTGACCCGCAAGGACATGGCAGAGACATTCTCTTTCGAAGATTTCAAGGAGCATGGTGGAAATCTTGTAATACCCGCAGATAGATTTCTGCACGAAGTAGCCTTCAAACTTTGGAAGGCCCCCAAATATGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

34.31

Weight (kDa)

5.67

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
Acc65I	GGTACC	3 cut(s)	323, 638, 689
AccB1I	GGYRCC	4 cut(s)	323, 638, 689, 768
AciI	CCGC	4 cut(s)	5, 754, 814, 882
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	4 cut(s)	223, 325, 640, 691
AfiI	CCNNNNNNNGG	3 cut(s)	25, 356, 935
AgsI	TTSAA	3 cut(s)	313, 853, 913
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	7 cut(s)	23, 200, 284, 391, 413, 630, 712
AluI	AGCT	7 cut(s)	23, 200, 284, 391, 413, 630, 712
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	3 cut(s)	451, 605, 824
AoxI	GGCC	2 cut(s)	48, 924
ApeKI	GCWGC	4 cut(s)	284, 346, 391, 410
ApoI	RAATTY	1 cut(s)	247
Asp718I	GGTACC	3 cut(s)	323, 638, 689
AspS9I	GGNCC	2 cut(s)	49, 925
AsuHPI	GGTGA	2 cut(s)	244, 506
AsuII	TTCGAA	1 cut(s)	843
BanI	GGYRCC	4 cut(s)	323, 638, 689, 768
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	4 cut(s)	271, 333, 378, 422
BccI	CCATC	5 cut(s)	35, 73, 84, 350, 680
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	451, 605, 824
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	4 cut(s)	285, 347, 392, 411
BlsI	GCNGC	4 cut(s)	286, 348, 393, 412
Bme1390I	CCNGG	1 cut(s)	585
BmgT120I	GGNCC	2 cut(s)	49, 925
BmiI	GGNNCC	6 cut(s)	325, 453, 640, 691, 770, 927
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
Bpu14I	TTCGAA	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 356, 935
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	4 cut(s)	157, 193, 282, 766
BseLI	CCNNNNNNNGG	3 cut(s)	25, 356, 935
BseMII	CTCAG	2 cut(s)	153, 657
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	2 cut(s)	123, 756
BseXI	GCAGC	4 cut(s)	271, 333, 378, 422
BsgI	GTGCAG	1 cut(s)	881
BshFI	GGCC	2 cut(s)	50, 926
BshNI	GGYRCC	4 cut(s)	323, 638, 689, 768
BsiHKAI	GWGCWC	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	25, 356, 935
BsmAI	GTCTC	3 cut(s)	451, 605, 824
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	50, 926
Bsp119I	TTCGAA	1 cut(s)	843
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	514
BspACI	CCGC	4 cut(s)	5, 754, 814, 882
BspANI	GGCC	2 cut(s)	50, 926
BspCNI	CTCAG	2 cut(s)	152, 656
BspLI	GGNNCC	6 cut(s)	325, 453, 640, 691, 770, 927
BspMI	ACCTGC	1 cut(s)	482
BspT104I	TTCGAA	1 cut(s)	843
BspT107I	GGYRCC	4 cut(s)	323, 638, 689, 768
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	448, 462
BstBI	TTCGAA	1 cut(s)	843
BstDEI	CTNAG	2 cut(s)	139, 643
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	4 cut(s)	157, 193, 282, 766
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	3 cut(s)	451, 605, 824
BstMBI	GATC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	583
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	271, 333, 378, 422
BstXI	CCANNNNNNTGG	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	50, 926
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	4 cut(s)	157, 193, 282, 766
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 453
BveI	ACCTGC	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	49, 925
Csp6I	GTAC	4 cut(s)	222, 324, 639, 690
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	5 cut(s)	271, 482, 823, 860, 942
CviQI	GTAC	4 cut(s)	222, 324, 639, 690
DdeI	CTNAG	2 cut(s)	139, 643
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	925
EcoRII	CCWGG	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	5 cut(s)	274, 485, 826, 863, 945
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	5 cut(s)	270, 481, 822, 859, 941
FauI	CCCGC	2 cut(s)	821, 889
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	285, 347, 392, 411
FokI	GGATG	4 cut(s)	164, 200, 289, 773
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	285, 347, 392, 411
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	4 cut(s)	285, 347, 392, 411
HaeIII	GGCC	2 cut(s)	50, 926
Hin1II	CATG	5 cut(s)	274, 485, 826, 863, 945
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	1 cut(s)	401
HphI	GGTGA	2 cut(s)	244, 506
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	3 cut(s)	142, 262, 646
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	4 cut(s)	230, 751, 916, 919
HpyCH4III	ACNGT	2 cut(s)	448, 462
HpyCH4V	TGCA	5 cut(s)	176, 191, 481, 610, 898
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
HpyF3I	CTNAG	2 cut(s)	139, 643
Hsp92II	CATG	5 cut(s)	274, 485, 826, 863, 945
KpnI	GGTACC	3 cut(s)	327, 642, 693
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	4 cut(s)	136, 451, 856, 938
LpnPI	CCDG	8 cut(s)	11, 118, 340, 408, 477, 503, 570, 597
Lsp1109I	GCAGC	4 cut(s)	271, 333, 378, 422
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	292, 808
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	2 cut(s)	245, 857
MfeI	CAATTG	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	3 cut(s)	247, 416, 522
MlyI	GAGTC	1 cut(s)	410
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	585
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	5 cut(s)	274, 485, 826, 863, 945
NlaIV	GGNNCC	6 cut(s)	325, 453, 640, 691, 770, 927
NmeAIII	GCCGAG	3 cut(s)	44, 412, 480
NmuCI	GTSAC	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	843
PaqCI	CACCTGC	1 cut(s)	482
PkrI	GCNGC	4 cut(s)	286, 348, 393, 412
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	6 cut(s)	325, 453, 640, 691, 770, 927
PspPI	GGNCC	2 cut(s)	49, 925
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	4 cut(s)	223, 325, 640, 691
RsaNI	GTAC	4 cut(s)	222, 324, 639, 690
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	4 cut(s)	285, 347, 392, 411
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	2 cut(s)	49, 925
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	247, 416, 522
SsiI	CCGC	4 cut(s)	5, 754, 814, 882
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	583
TaaI	ACNGT	2 cut(s)	448, 462
TaqI	TCGA	1 cut(s)	843
TasI	AATT	3 cut(s)	247, 416, 522
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	2 cut(s)	183, 453
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	4 cut(s)	284, 346, 391, 410
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	4 cut(s)	210, 259, 293, 584
TspGWI	ACGGA	3 cut(s)	51, 331, 394
TspRI	CASTG	2 cut(s)	183, 453
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	485
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.